View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_65 (Length: 240)
Name: NF10501_low_65
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_65 |
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| [»] chr8 (6 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 8893952 - 8894175
Alignment:
| Q |
18 |
atatgacacaaaggtggaaagcctgtcaaagtaaatggatactcgcttgtttggattccttatgaagattgtgaattgcattgagattgacatgtc-ggt |
116 |
Q |
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| T |
8893952 |
atatgacacaaaggtggaaagcctgtcaaagtaaatggatactcgcttgtttggattccttatgaagattgtgaattgcattgagattgacatgtctggc |
8894051 |
T |
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| Q |
117 |
ggtgaagttgcattgaggccatagatagcagcacttgtgactgtgatgtgaggttttgtgggatggtatgcaagccataagatgaggattataatgccaa |
216 |
Q |
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| T |
8894052 |
ggtgaagtagcattgaggctatagattgcagcacttgtgactgtgatatgaggttttgagggatggtatgcaagccataagatgaggattataatgccaa |
8894151 |
T |
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| Q |
217 |
gtacgaggaagaagattgtgatgc |
240 |
Q |
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| T |
8894152 |
gtacaaggaagaagattgtgatgc |
8894175 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 212350 - 212389
Alignment:
| Q |
199 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
238 |
Q |
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| T |
212350 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
212389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 239904 - 239865
Alignment:
| Q |
199 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
238 |
Q |
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| T |
239904 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
239865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 725973 - 726012
Alignment:
| Q |
199 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
238 |
Q |
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| T |
725973 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
726012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 793259 - 793220
Alignment:
| Q |
199 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
238 |
Q |
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| T |
793259 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
793220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 798474 - 798513
Alignment:
| Q |
199 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
238 |
Q |
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| T |
798474 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
798513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 24281855 - 24281915
Alignment:
| Q |
180 |
tggtatgcaagccataagatgaggattataatgccaagtacgaggaagaagattgtgatgc |
240 |
Q |
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| T |
24281855 |
tggtatgcaagccataagatgagcagtataatgccaagtaagaggaagaagattgtgatgc |
24281915 |
T |
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