View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10501_low_66 (Length: 239)
Name: NF10501_low_66
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_66 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 31269751 - 31269959
Alignment:
| Q |
13 |
agcaaaggtgaagcttgattctttccttaaaatgatacttgaattgatatcaaaacaataccaaaagttttgtgtgtactccactttattattaaatgag |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31269751 |
agcaaaggtgaagctcgattctttccttaaaatgatacttgaattgatatcaaaacaataccaaaagttttgtgtgtactccactttattattaaatgag |
31269850 |
T |
|
| Q |
113 |
ttgggaaagaaaattaaaagttgtataattgtacgttatgaactgtattaatgggatataaaagctacaaaaaaggggaatgttttannnnnnnatgaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31269851 |
ttgggaaagaaaattaaaagttgtataattgtacgttatgaactgtattaatgggatataaaagctacaaaaaaggggaatgttttatttttttatgaat |
31269950 |
T |
|
| Q |
213 |
agtaaaagg |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
31269951 |
agtaaaagg |
31269959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University