View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_67 (Length: 238)
Name: NF10501_low_67
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 19845180 - 19845383
Alignment:
| Q |
17 |
agtttcatccctaagctgcttaactcacaaatataatttatctctcttctatatttcttgtgg-actctcccatttttacaattttaaatgcataaaatt |
115 |
Q |
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| T |
19845180 |
agtttcatccctaagctgcttaactcacaaatataatttatct---ttctatatttcttgtgggactctcccatttttacaattttaaatgcataaaatt |
19845276 |
T |
|
| Q |
116 |
aatattataatcctattgaactgaagtttcttaaattagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaaacaatattttatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19845277 |
aatattataatcctattgaactgaagtttcttaaattagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaaacaatattttatt |
19845376 |
T |
|
| Q |
216 |
accctat |
222 |
Q |
| |
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||||||| |
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| T |
19845377 |
accctat |
19845383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 45509237 - 45509028
Alignment:
| Q |
17 |
agtttcatccctaagctgcttaactcacaaatataatttatctctcttct---atatttcttgtggactctcccatttttacaattttaaatgcataaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45509237 |
agtttcatccctaagctgcttaactcacaaatataatttatctctcttcttctatatttcttgtggactctcccatttttacaattttaaatgcataaaa |
45509138 |
T |
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| Q |
114 |
ttaatattataatcctattgaactgaagtttcttaaattagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaaacaatatttta |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45509137 |
ttaatattataatcctgttgaactgaagtttcttaaatcagcaactttgactaaatctataaaaactcaaaattttgtggtacaccaaagcaatatttta |
45509038 |
T |
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| Q |
214 |
ttaccctatg |
223 |
Q |
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|||||||||| |
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| T |
45509037 |
ttaccctatg |
45509028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 40946560 - 40946645
Alignment:
| Q |
35 |
cttaactcacaaatataatttatctctcttctatatttcttgtggactctcccatttttacaatttt-aaatgcataaaattaata |
119 |
Q |
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|||||| |||| |||| |||| ||||||||| ||||||| ||| || |||||||||| ||| |||| ||||||||||||| |||| |
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| T |
40946560 |
cttaacccacatatatcatttttctctcttccatatttcatgttcacactcccattttaacactttttaaatgcataaaatcaata |
40946645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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