View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_69 (Length: 236)
Name: NF10501_low_69
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 39083192 - 39082975
Alignment:
| Q |
1 |
ttttgcatctaagcactccagctcctgctgtcattgaagccacaagcataggtggtcgtgctgacatgcttgaggctttggcatatgtcgaagaagatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083192 |
ttttgcatctaagcactccagctcctgctgtcattgaagccacaagcataggtggtcgtgctgacatgcttgaggctttggcatatgtcgaagaagatgc |
39083093 |
T |
|
| Q |
101 |
tcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctttgatgagtaaaaatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083092 |
tcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctttgatgagtaaaaatgc |
39082993 |
T |
|
| Q |
201 |
ttcgtgatctgataaata |
218 |
Q |
| |
|
|||||||||||||||||| |
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| T |
39082992 |
ttcgtgatctgataaata |
39082975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 31728023 - 31727807
Alignment:
| Q |
1 |
ttttgcatctaagcactccagctcctgctgtcattgaagccacaagcataggtggtcgtgctgacatgcttgaggctttggcatatgtcgaagaagatgc |
100 |
Q |
| |
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||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31728023 |
ttttgcatctaagaactccagcaccagcagtcattgaagccacaagcataggtggtcgtgctgacatacttgaggctttggcatatgtcgaagaagatgc |
31727924 |
T |
|
| Q |
101 |
tcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctttgatgagtaaaaatgc |
200 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| |
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| T |
31727923 |
tcccgctccagacggtgtgaaataggcaccattcaatattagatctccttcagatctcc-agtccagttctcccactcaccttttgatgagtaaaaatgc |
31727825 |
T |
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| Q |
201 |
ttcgtgatctgataaata |
218 |
Q |
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|||||||||||||||||| |
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| T |
31727824 |
ttcgtgatctgataaata |
31727807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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