View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_7 (Length: 401)
Name: NF10501_low_7
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 37973862 - 37973484
Alignment:
| Q |
19 |
aaattgttcattaactcaatgtcttaaaatctgtagcttttgatttggctgaaaatgaatatactaaattaatttgtttttggcagtctgcttggatgga |
118 |
Q |
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| T |
37973862 |
aaattgttcattaactcaatgtcttaaaatctgtagcttttgatttggctgaaaatgaatatactaaattaatttgtttttggcagtctgcttggatgga |
37973763 |
T |
|
| Q |
119 |
acattgcctgcttatcattttgatcgcggatacggatccggtgcaaacagctggcttgttaatttagaggtatcacatgatctaattaatatatgcttct |
218 |
Q |
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| T |
37973762 |
acattgcctgcttatcattttgatcacggatacggatccggtgcaaacagctggcttgttaatttagaggtatcacatgatctaattaatatatgcttct |
37973663 |
T |
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| Q |
219 |
tata-ttattttttctctcaatatgttcatattgtaaaggatgacaagtttctctattggtaaatcagaagtatttcttgttaaaagtgttgtttgggac |
317 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37973662 |
tatattttttttttctctcaatatgttcatattgtaaaggatgacaagtttttctattggtaaatcagaagtatttcttgttaaaagtgttgtttgggac |
37973563 |
T |
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| Q |
318 |
acactttttgtgaaggaaaaatatctaaaaacatgtcatgtattgctgttttgaagtattgtttatttcctatgctact |
396 |
Q |
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| T |
37973562 |
acactttttgtgaaggaaaaatatctaaatacatgtcatgtattgctgttttgaagtattgtttatttccaatgctact |
37973484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 45666554 - 45666654
Alignment:
| Q |
91 |
tttgtttttggcagtctgcttggatggaacattgcctgcttatcattttgatcgcggatacggatccggtgcaaacagctggcttgttaatttagaggta |
190 |
Q |
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||||||| | ||||| ||||||||||||||||| |||| ||| ||||| | || ||||| ||||| || ||| |||| ||||||||||||||||||||| |
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| T |
45666554 |
tttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggta |
45666653 |
T |
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| Q |
191 |
t |
191 |
Q |
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| |
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| T |
45666654 |
t |
45666654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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