View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_70 (Length: 235)
Name: NF10501_low_70
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 488019 - 487810
Alignment:
| Q |
16 |
aatatggatgattacagtcattgcagttggggtaggcttggtcataataattttcatttgctacttgtgctttctcagaaatcggcaaagtaagttgttt |
115 |
Q |
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| T |
488019 |
aatatggatgattacagtcattgcagttggggtaggcttggtcataataattttcatttgctacttgtgctttctcagaaatcggcaaagtaagttgttt |
487920 |
T |
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| Q |
116 |
ggagattgtatatcagtgtttttcatttattttatggtatatattgtagcaccaatactttgaattgaaagtgtttctggtgtccgactcctacaagtgt |
215 |
Q |
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| T |
487919 |
ggagattgtatatcagtgtttttcatttattttatggtatatattgtagcaccaatactttgaattgaaagtgtttctggtgtccgactcctacaagtgt |
487820 |
T |
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| Q |
216 |
gagtgtctgt |
225 |
Q |
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| T |
487819 |
gagtgtctgt |
487810 |
T |
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