View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10501_low_71 (Length: 231)

Name: NF10501_low_71
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10501_low_71
NF10501_low_71
[»] chr1 (4 HSPs)
chr1 (1-114)||(29442464-29442580)
chr1 (186-231)||(29442346-29442391)
chr1 (1-36)||(29452537-29452572)
chr1 (34-71)||(29452466-29452503)
[»] chr2 (3 HSPs)
chr2 (26-83)||(10354101-10354157)
chr2 (13-47)||(10336751-10336785)
chr2 (6-50)||(9283343-9283390)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 29442580 - 29442464
Alignment:
Q  1 ccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggt-------ttagggtttttcctttcttcctctccatg 93  Q
    ||||||||||||||||||||||||||| |||||||||||||||    |||||||||||||||||       |||||||||||||||||||||||||| ||    
T  29442580 ccggtaagtatctccggcggaagatccaccattggaaggaagg----aaggttctagttagggtttaggccttagggtttttcctttcttcctctccttg 29442485  T
Q  94 tacgacccaaatgcaacacag 114  Q
    |||||||||||||||||||||    
T  29442484 tacgacccaaatgcaacacag 29442464  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 29442391 - 29442346
Alignment:
Q  186 cttgattacgtgatcttggacgcacgaattatgaattactctgagt 231  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  29442391 cttgattacatgatcttggacgcacgaattatgaattactctgagt 29442346  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29452572 - 29452537
Alignment:
Q  1 ccggtaagtatctccggcggaagatccgccattgga 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  29452572 ccggtaagtatctccggcggaagatccgccattgga 29452537  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 29452503 - 29452466
Alignment:
Q  34 ggaaggaaggaaggaaggttctagttagggtttagggt 71  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  29452503 ggaaggaaggaaggaaggttgtagctagggtttagggt 29452466  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 10354101 - 10354157
Alignment:
Q  26 ccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttctt 83  Q
    ||||||||| |||||||||| ||||||||| | |||||||||||||||||| ||||||    
T  10354101 ccgccattgtaaggaaggaatgaaggttct-gctagggtttagggtttttcatttctt 10354157  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 10336751 - 10336785
Alignment:
Q  13 tccggcggaagatccgccattggaaggaaggaagg 47  Q
    |||||||||||||||||||||| ||||||||||||    
T  10336751 tccggcggaagatccgccattgtaaggaaggaagg 10336785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 9283390 - 9283343
Alignment:
Q  6 aagtatctccggcggaagatc---cgccattggaaggaaggaaggaag 50  Q
    |||||| ||||||||||||||   ||||||||||||||||||||||||    
T  9283390 aagtatgtccggcggaagatcggacgccattggaaggaaggaaggaag 9283343  T

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