View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10501_low_72 (Length: 230)

Name: NF10501_low_72
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10501_low_72
NF10501_low_72
[»] chr4 (6 HSPs)
chr4 (17-216)||(24298183-24298382)
chr4 (17-216)||(23875392-23875591)
chr4 (17-216)||(23423362-23423561)
chr4 (17-216)||(23447853-23448061)
chr4 (72-216)||(26827944-26828088)
chr4 (112-216)||(23446603-23446707)
[»] chr8 (1 HSPs)
chr8 (64-216)||(35961726-35961878)
[»] chr2 (4 HSPs)
chr2 (77-216)||(41257827-41257966)
chr2 (72-216)||(41244323-41244467)
chr2 (66-135)||(41251859-41251928)
chr2 (16-48)||(41244249-41244281)
[»] chr1 (2 HSPs)
chr1 (161-216)||(12165142-12165197)
chr1 (111-167)||(30437072-30437128)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 24298382 - 24298183
Alignment:
Q  17 atctaagccttctttggagactttccagccttctttggctccttaggaacagctttttcattcttcttaggcaaaaggattgggttaatgtttggaagaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24298382 atctaagccttctttggagactttccagccttctttggctccttaggaacagctttttcattcttcttaggcaaaaggattgggttaatgtttggaagaa 24298283  T
Q  117 caccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaattattctattcttctt 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  24298282 caccaccatgagcaatggtaacaccattaagcaatttaccaagctcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttctt 24298183  T

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Target: chr4; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 23875591 - 23875392
Alignment:
Q  17 atctaagccttctttggagactttccagccttctttggctccttaggaacagctttttcattcttcttaggcaaaaggattgggttaatgtttggaagaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  23875591 atctaagccttctttggagactttccagccttctttggctccttagtatcagttttttcattcttcttaggcaataggattgggttaatgtttggaagaa 23875492  T
Q  117 caccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaattattctattcttctt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  23875491 caccaccatgagcaatggtaacaccattaagcaatttaccaagttcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttctt 23875392  T

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Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 23423362 - 23423561
Alignment:
Q  17 atctaagccttctttggagactttccagccttctttggctccttaggaacagctttttcattcttcttaggcaaaaggattgggttaatgtttggaagaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||||||||||||| |||||||||||||||||||    
T  23423362 atctaagccttctttggagactttccagccttctttggctccttagaaacagaattttcaatcttcttaggcaaaaggatagggttaatgtttggaagaa 23423461  T
Q  117 caccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaattattctattcttctt 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  23423462 caccaccatgagcaatggtaacaccattaagcaatttaccaagatcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttctt 23423561  T

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Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 23447853 - 23448061
Alignment:
Q  17 atctaagccttctttggagactttccagcctt---------ctttggctccttaggaacagctttttcattcttcttaggcaaaaggattgggttaatgt 107  Q
    ||||||||||||||||||||||||||||| ||         ||| || ||||||| |||||| |||||| ||||||||||||||||||||||||| ||||    
T  23447853 atctaagccttctttggagactttccagcttttttgggagacttaggttccttagaaacagccttttcagtcttcttaggcaaaaggattgggttgatgt 23447952  T
Q  108 ttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaattattct 207  Q
    | |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||    
T  23447953 tgggaaaaacaccaccatgagcaatggtaacaccattaagcaatttaccaagttcttcatcattcctaacagccaacaacacatgccttggaatgattct 23448052  T
Q  208 attcttctt 216  Q
    |||||||||    
T  23448053 attcttctt 23448061  T

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Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 26828088 - 26827944
Alignment:
Q  72 tttcattcttcttaggcaaaaggattgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgtt 171  Q
    ||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||| || ||||||  ||||| ||| |||||||||||||| ||    
T  26828088 tttcagtcttcttaggcaacagaattgggttaatgttcggaagaacaccaccatgagcaattgtaacaccagcaagcagttttccaagctcttcatcatt 26827989  T
Q  172 cctcacagccaacaacacatgccttggaattattctattcttctt 216  Q
    ||| ||||||||||||| |||||||||||| ||||||||||||||    
T  26827988 cctaacagccaacaacaaatgccttggaatgattctattcttctt 26827944  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 23446603 - 23446707
Alignment:
Q  112 aagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctcacagccaacaacacatgccttggaattattctattc 211  Q
    ||||| ||||||||||||||| || |||||   ||| | ||| ||||| |||||||| ||| | ||||| ||||||| |||||||||||| |||||||||    
T  23446603 aagaataccaccatgagcaattgtaacacctacaagtagtttcccaagttcttcatcattcataacagcaaacaacaaatgccttggaataattctattc 23446702  T
Q  212 ttctt 216  Q
    |||||    
T  23446703 ttctt 23446707  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 216
Target Start/End: Complemental strand, 35961878 - 35961726
Alignment:
Q  64 aacagctttttcattcttcttaggcaaaaggattgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctct 163  Q
    ||||| ||||||| | |||||||| ||||| |  |||||||| || |||||||||||||||||||||||||| ||||||  ||||||||| |||||||||    
T  35961878 aacaggtttttcacttttcttaggtaaaagaacagggttaatattaggaagaacaccaccatgagcaatggtaacaccagcaagcaatttcccaagctct 35961779  T
Q  164 tcatcgttcctcacagccaacaacacatgccttggaattattctattcttctt 216  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||    
T  35961778 tcatcattcctcacagccaacaacacatgccttggaataatcctattcttctt 35961726  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 41257966 - 41257827
Alignment:
Q  77 ttcttcttaggcaaaaggattgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgttcctca 176  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| || ||||||   | |||||| ||||| ||||||||||||||||    
T  41257966 ttcttcttaggcaaaaggattgggttgatgtttggaagaacacctccatgtgcaattgtaacaccagctaacaattttccaagttcttcatcgttcctca 41257867  T
Q  177 cagccaacaacacatgccttggaattattctattcttctt 216  Q
    ||||||||||||| ||||| || || || || ||||||||    
T  41257866 cagccaacaacacgtgcctagggatgatcctgttcttctt 41257827  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 41244323 - 41244467
Alignment:
Q  72 tttcattcttcttaggcaaaaggattgggttaatgtttggaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcatcgtt 171  Q
    ||||| |||||||||||||||| |  ||||| ||||||||||||||||||||||| ||||| || || |||   |  ||||| || ||||||||||| ||    
T  41244323 tttcagtcttcttaggcaaaagcacagggttgatgtttggaagaacaccaccatgtgcaattgtaactccagctaataattttcctagctcttcatcatt 41244422  T
Q  172 cctcacagccaacaacacatgccttggaattattctattcttctt 216  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||    
T  41244423 cctcactgccaacaacacgtgccttggaattatcctattcttctt 41244467  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 41251928 - 41251859
Alignment:
Q  66 cagctttttcattcttcttaggcaaaaggattgggttaatgtttggaagaacaccaccatgagcaatggt 135  Q
    |||| |||||| ||||||| ||||| |  || ||||| ||||| ||||||||||||||| ||||||||||    
T  41251928 cagccttttcagtcttctttggcaacaacatagggttgatgttaggaagaacaccaccacgagcaatggt 41251859  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 41244249 - 41244281
Alignment:
Q  16 aatctaagccttctttggagactttccagcctt 48  Q
    ||||||||||||||||||||| |||||||||||    
T  41244249 aatctaagccttctttggagattttccagcctt 41244281  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 12165197 - 12165142
Alignment:
Q  161 tcttcatcgttcctcacagccaacaacacatgccttggaattattctattcttctt 216  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  12165197 tcttcatcgttcctaacagccaacaacacatgccttggaatgattctattcttctt 12165142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 30437128 - 30437072
Alignment:
Q  111 gaagaacaccaccatgagcaatggttacaccattaagcaatttaccaagctcttcat 167  Q
    ||||||||||||||||||||||||| || |||  | |||||||  ||||||||||||    
T  30437128 gaagaacaccaccatgagcaatggtaactccagcatgcaatttttcaagctcttcat 30437072  T

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