View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_74 (Length: 229)
Name: NF10501_low_74
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 15907342 - 15907128
Alignment:
| Q |
10 |
ctaagcatgtgtttgacctgacaactacttgaacgctcctacatgtttaatgaaaagcttgaatgtccagcttgagcaaatcatggtaaaatggacattg |
109 |
Q |
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| T |
15907342 |
ctaagcatgcgtttgacctgacgactatttggacgctcccgcatgtttagtgaaaagcttgaatatccagcttcagcaaatcatggtaaaatggacattg |
15907243 |
T |
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| Q |
110 |
gaatgcaagaatcttcgtttcaacacgaaccaaacatgccataagaagtcattgccgcgataaataatgattcattttgtctaaaggacctaaatttgat |
209 |
Q |
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| T |
15907242 |
gaacgcaagaatctttgtttcaacgcgaaccaaacatgccataagaagtcattgccgcgataaataatgattcattttgtctaaaggactcaagtttgat |
15907143 |
T |
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| Q |
210 |
cctttggacaactgt |
224 |
Q |
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| T |
15907142 |
cctttgggcaactgt |
15907128 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 32159151 - 32159208
Alignment:
| Q |
52 |
atgtttaatgaaaagcttgaatgtccagcttgagcaaatcatggtaaaatggacattg |
109 |
Q |
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||||||| ||||||||||||||||||||||| | ||||||| ||||||||||| |||| |
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| T |
32159151 |
atgtttagtgaaaagcttgaatgtccagcttcatcaaatcacggtaaaatggatattg |
32159208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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