View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_77 (Length: 221)
Name: NF10501_low_77
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 53177392 - 53177603
Alignment:
| Q |
1 |
tcttctacgtattaagttaagttcttatatcattacatggatcaactaagtactaaattattttcaattttcc-ttatcatacttaatctttcaatatca |
99 |
Q |
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| T |
53177392 |
tcttctacatattaagttaagttcttatatcattacatggatcaactaagtactaaattattttcaattttcccttatcatacttaatctttcaatatca |
53177491 |
T |
|
| Q |
100 |
ggggtattatcaacaacattcacactcgttaacaaatgcaactacacggtatggccgggaattctctccaacgccggcgttgcaccgcttccaaccaccg |
199 |
Q |
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| T |
53177492 |
ggggtattatcaacaacattcacactcgttaacaaatgcaactacacggtatggccgggaattctctccaacgccggcgttgcaccgcttccaaccaccg |
53177591 |
T |
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| Q |
200 |
gtttcgttcttc |
211 |
Q |
| |
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|||||||||||| |
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| T |
53177592 |
gtttcgttcttc |
53177603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 14039920 - 14039868
Alignment:
| Q |
110 |
caacaacattcacactcgttaacaaatgcaactacacggtatggccgggaatt |
162 |
Q |
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| T |
14039920 |
caacaacattcacaattgttaacaagtgcaactacactgtttggcctggaatt |
14039868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 8118779 - 8118879
Alignment:
| Q |
109 |
tcaacaacattcacactcgttaacaaatgcaactacacggtatggccgggaattctctccaacgccggcgttgcaccgcttccaaccaccggtttcgttc |
208 |
Q |
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||||||||||||||| | ||||||||||| ||||||| || ||||| || ||||| || || || || || || | |||||||||||||| ||||||| |
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| T |
8118779 |
tcaacaacattcacatttgttaacaaatgtgactacacagtgtggccagggattctttcaaatgctggggtcccaacacttccaaccaccggcttcgttc |
8118878 |
T |
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| Q |
209 |
t |
209 |
Q |
| |
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| |
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| T |
8118879 |
t |
8118879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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