View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_79 (Length: 218)
Name: NF10501_low_79
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 21258618 - 21258802
Alignment:
| Q |
12 |
agcaaaggtgtgatactcacccacaagaacttcatcgcgacttcattgataataaacatggatgatgatttagcaggggaattaaacgtgttcctctgcg |
111 |
Q |
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| T |
21258618 |
agcaaaggtgtgatactcacccacaagaacttcatcgcgacttcattgatgataaacatggatgatgatttagcaggggaattaaatgtgttcctctgcg |
21258717 |
T |
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| Q |
112 |
ttttaccgatgtttcatgtgtttagattggcggttataacatatgcgcagctaaggagaggaagtgcggtggtttcaacggggag |
196 |
Q |
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| T |
21258718 |
ttttaccgatgtttcatgtgtttagattggcggttataacatacgcgcagctaaggagaggaagtgcggtggtttcaacggggag |
21258802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 21242849 - 21243040
Alignment:
| Q |
12 |
agcaaaggtgtgatactcacccacaagaacttcatcgcgacttcattgataataaacatggatgatgatttagcaggggaattaaac---gtgttcctct |
108 |
Q |
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| T |
21242849 |
agcaaaggtgtgattctcacacacaagaacttcatcgcagcgtcgttgatgataaacatggatgatgatttagctggggaattaaacaatgtgttcatct |
21242948 |
T |
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| Q |
109 |
gcgttttaccgatgtttcatgtgtttagattggcggttataacatatgcgcagctaaggagaggaagtgcggtggtttcaacggggaggttt |
200 |
Q |
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| T |
21242949 |
gcgttttaccgatgtttcatgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggttt |
21243040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 21254109 - 21254303
Alignment:
| Q |
12 |
agcaaaggtgtgatactcacccacaagaacttcatcgcgacttcattgataataaacatggatgatgatttagcaggggaattaaac---gtgttcctct |
108 |
Q |
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||||| || |||||||| |||||||||||| |||| ||| | || || || |||||||| |||||||||||||||||||||||| |||||| ||| |
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| T |
21254109 |
agcaagggcgtgatacttacccacaagaacgtcattgcggtggcgttaatgattaacatggacgatgatttagcaggggaattaaacaacgtgttcttct |
21254208 |
T |
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| Q |
109 |
gcgttttaccgatgttt---catgtgtttagattggcggttataacatatgcgcagctaaggagaggaagtgcggtggtttcaacggggaggttt |
200 |
Q |
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| T |
21254209 |
gcgttttaccgatgtttattcatgtgtttagattggtggttataacatacgcgcagctaaggagaggaagtacggtggtttcaacggggaggttt |
21254303 |
T |
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