View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10501_low_80 (Length: 218)

Name: NF10501_low_80
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10501_low_80
NF10501_low_80
[»] chr7 (10 HSPs)
chr7 (1-202)||(38321845-38322046)
chr7 (2-197)||(38156956-38157149)
chr7 (89-200)||(43028249-43028360)
chr7 (106-196)||(38149286-38149376)
chr7 (155-200)||(38172583-38172628)
chr7 (164-200)||(35072739-35072775)
chr7 (164-200)||(35099076-35099112)
chr7 (164-200)||(42797405-42797441)
chr7 (87-134)||(38187148-38187195)
chr7 (4-47)||(45999782-45999825)
[»] chr6 (2 HSPs)
chr6 (1-195)||(4163436-4163628)
chr6 (1-195)||(4225057-4225249)
[»] chr5 (1 HSPs)
chr5 (164-200)||(9664285-9664321)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 38322046 - 38321845
Alignment:
Q  1 ctgactcacctgtgaagggctcatgaccatagctaaattctcgatattacttattgtgcaattgcaccaaagggactgtgtagacatttctttctcttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322046 ctgactcacctgtgaagggctcatgaccatagctaaattctcgatattacttattgtgcaattgcaccaaagggactgtgtagacatttctttctcttag 38321947  T
Q  101 ctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaatgcatcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  38321946 ctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccattatattcaaaggatgagagattcaatgcatcaat 38321847  T
Q  201 tg 202  Q
    ||    
T  38321846 tg 38321845  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 38156956 - 38157149
Alignment:
Q  2 tgactcacctgtgaagggctcatgaccatagctaaattctcgatat-tacttattgtgcaattgcaccaaagggactgtgtagacatttctttctcttag 100  Q
    |||||||||||||||| |||||| | ||||| ||||||||| |||| || | ||  |||||||| ||||||||||   ||  ||  ||| | ||| ||||    
T  38156956 tgactcacctgtgaagtgctcataatcatagataaattctcaatatgtagtaatcttgcaattggaccaaaggga---tgctgatttttttctcttttag 38157052  T
Q  101 ctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaatgcatc 197  Q
    ||| ||||||||||| |||||||||| |||||||  |||||| |||  | | ||| || | |||||| |||||||||||||||||||||||||||||    
T  38157053 ctgcattccaaaaaagcttcaataacattggagccttaacattaaacccaaccgtcgtatgaccactgtattcaaatgatgagagattcaatgcatc 38157149  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 43028360 - 43028249
Alignment:
Q  89 tctttctcttagctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagatt 188  Q
    ||||||||  |||||||||||| |||||||||||||| ||||| || |||| |  ||    | |||| |||| | ||||||||||||| |||||||||||    
T  43028360 tctttctcagagctgtattccagaaaaccttcaataatcttggggccgtaaaagaaattatcctcgtggtgtaagcactatattcaaaggatgagagatt 43028261  T
Q  189 caatgcatcaat 200  Q
    ||||||||||||    
T  43028260 caatgcatcaat 43028249  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 38149286 - 38149376
Alignment:
Q  106 ttccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaatgcat 196  Q
    ||||| |||||||| |||||  |||||||  |||||||||| ||| ||   |||| ||||||||||||||| |||| ||||||||||||||    
T  38149286 ttccagaaaacctttaataatattggagcattaacatcaaattccgtcagggtgtgaccactatattcaaaggatgtgagattcaatgcat 38149376  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 38172583 - 38172628
Alignment:
Q  155 tagtgtcaccactatattcaaatgatgagagattcaatgcatcaat 200  Q
    |||||| ||||||||||||||| ||||||||||| |||||||||||    
T  38172583 tagtgtaaccactatattcaaaggatgagagatttaatgcatcaat 38172628  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 35072739 - 35072775
Alignment:
Q  164 cactatattcaaatgatgagagattcaatgcatcaat 200  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35072739 cactatattcaaaggatgagagattcaatgcatcaat 35072775  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 35099076 - 35099112
Alignment:
Q  164 cactatattcaaatgatgagagattcaatgcatcaat 200  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35099076 cactatattcaaaggatgagagattcaatgcatcaat 35099112  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 42797441 - 42797405
Alignment:
Q  164 cactatattcaaatgatgagagattcaatgcatcaat 200  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42797441 cactatattcaaaggatgagagattcaatgcatcaat 42797405  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 38187148 - 38187195
Alignment:
Q  87 tttctttctcttagctgtattccaaaaaaccttcaataaccttggagc 134  Q
    ||||| ||| ||||||| ||||||||||||||||||||| ||||||||    
T  38187148 tttctctctattagctgcattccaaaaaaccttcaataaacttggagc 38187195  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 45999782 - 45999825
Alignment:
Q  4 actcacctgtgaagggctcatgaccatagctaaattctcgatat 47  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||    
T  45999782 actcacctgtgaagggctgatgatcatagctaaattctcaatat 45999825  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4163436 - 4163628
Alignment:
Q  1 ctgactcacctgtgaagggctcatgaccatagctaaattctcgatattactt-attgtgcaattgcaccaaagggactgtgtagacatttctttctctta 99  Q
    ||||||||||||||||||  |||||| ||||||||||||||  | || || | ||  || ||||||||||||| ||   ||| || || ||| |  ||||    
T  4163436 ctgactcacctgtgaaggcatcatgatcatagctaaattctgaacatgacgtgatcttggaattgcaccaaagagatgatgtggatatctctcttcctta 4163535  T
Q  100 gctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaatgca 195  Q
    | || ||||||||||||||||||||||||||||||  |||||| ||  ||   | | ||||  |||||||||||||| ||||||||||||||||||    
T  4163536 gttgcattccaaaaaaccttcaataaccttggagctttaacatgaagttc---ccttgtgtagccactatattcaaaggatgagagattcaatgca 4163628  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4225057 - 4225249
Alignment:
Q  1 ctgactcacctgtgaagggctcatgaccatagctaaattctcgatattactt-attgtgcaattgcaccaaagggactgtgtagacatttctttctctta 99  Q
    ||||||||||||||||||  |||||| ||||||||||||||  | || || | ||  || ||||||||||||| ||   ||| || || ||| |  ||||    
T  4225057 ctgactcacctgtgaaggcatcatgatcatagctaaattctgaacatgacgtgatcttggaattgcaccaaagagatgatgtggatatctctcttcctta 4225156  T
Q  100 gctgtattccaaaaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcaccactatattcaaatgatgagagattcaatgca 195  Q
    | || ||||||||||||||||||||||||||||||  |||||| ||  ||   | | ||||  |||||||||||||| ||||||||||||||||||    
T  4225157 gttgcattccaaaaaaccttcaataaccttggagctttaacatgaagttc---ccttgtgtagccactatattcaaaggatgagagattcaatgca 4225249  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 9664321 - 9664285
Alignment:
Q  164 cactatattcaaatgatgagagattcaatgcatcaat 200  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  9664321 cactatattcaaaggatgagagattgaatgcatcaat 9664285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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