View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_84 (Length: 207)
Name: NF10501_low_84
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 35926352 - 35926547
Alignment:
| Q |
1 |
agtcatgaaaagctaccccctttgatatatttgttgtcactgaattctggnnnnnnnnnaaggtttaaaaacattggattttgattatatttgttgaaat |
100 |
Q |
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| T |
35926352 |
agtcatgaaaagctaccccctttgatatatttgttgtcactgaattctggtttttttttaaggtttaaaaacattggattttgattatatttgttgaaat |
35926451 |
T |
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| Q |
101 |
tgatacaaaagttataaaattgattctagttgttgatgaatttctggggtggatgcttctcaacccaaagatctgtggtatacatagatatccttt |
196 |
Q |
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| T |
35926452 |
tgatacaaaagttataaaattgattctagttgttgatgaatttctggggtggatgcttctcaacccaaagatctgtggtatacatagatatccttt |
35926547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 38664131 - 38664027
Alignment:
| Q |
61 |
aggtttaaaaacattggattttgattatatttgttgaaattgatacaaaagttataaaattgattctagttgttgatgaatttctggggtggatgcttct |
160 |
Q |
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| T |
38664131 |
aggtttaaaaaaattggattttgattatatttgttgaaattgatacaaaagttataaaattggttctagttgttgatgaatttttggggtgggtgcttct |
38664032 |
T |
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| Q |
161 |
caacc |
165 |
Q |
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| T |
38664031 |
caacc |
38664027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 17690344 - 17690300
Alignment:
| Q |
73 |
attggattttgattatatttgttgaaattgatacaaaagttataaa |
118 |
Q |
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| T |
17690344 |
attgggttttgattagatttgttgaaattgat-caaaagttataaa |
17690300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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