View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10501_low_86 (Length: 202)
Name: NF10501_low_86
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_86 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: scaffold0083 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 54374 - 54541
Alignment:
| Q |
14 |
agcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctga |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54374 |
agcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacctga |
54470 |
T |
|
| Q |
114 |
aatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54471 |
aatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattt |
54541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 9980763 - 9980596
Alignment:
| Q |
14 |
agcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctga |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9980763 |
agcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacctga |
9980667 |
T |
|
| Q |
114 |
aatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9980666 |
aatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattt |
9980596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 10035300 - 10035133
Alignment:
| Q |
14 |
agcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctga |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10035300 |
agcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacctga |
10035204 |
T |
|
| Q |
114 |
aatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||||| | ||||| ||||||||||||||||| |
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| T |
10035203 |
aatgggaacacaacttgtctatcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattt |
10035133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 10263998 - 10263831
Alignment:
| Q |
14 |
agcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctga |
113 |
Q |
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|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
10263998 |
agcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacctga |
10263902 |
T |
|
| Q |
114 |
aatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||| |
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|
| T |
10263901 |
aatgggaacacaacttgtctatcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattt |
10263831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 10583829 - 10583712
Alignment:
| Q |
68 |
attgattattggcagttttctggtaggaactgtggaacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatga |
166 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10583829 |
attgattattggcagttttctggtaggaaatgtggaacatacctgaaaacgggaacacaacttgtctatcatattgtgactttgtgatttatttgtatga |
10583730 |
T |
|
| Q |
167 |
cagggatgtgagcaattt |
184 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
10583729 |
cagggatgtgagcaattt |
10583712 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 10130212 - 10130080
Alignment:
| Q |
14 |
agcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctga |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||| |
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| T |
10130212 |
agcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagaggattgattattggc---tttctggtaggaact-aggagcatacctga |
10130117 |
T |
|
| Q |
114 |
aatgggaacacaacttgtctatcatattgtgactttg |
150 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
10130116 |
aatgggaacacaacttgtctatcatattgtgcctttg |
10130080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 10520736 - 10520615
Alignment:
| Q |
60 |
tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt |
159 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
10520736 |
tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttggtaatttatt |
10520640 |
T |
|
| Q |
160 |
tgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
|||||| |||||||||||||||| |
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|
| T |
10520639 |
gatatgactgggatgtgagcaattt |
10520615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 9853128 - 9853007
Alignment:
| Q |
60 |
tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt |
159 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||||| |
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|
| T |
9853128 |
tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtaacctggtcatttatt |
9853032 |
T |
|
| Q |
160 |
tgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
| ||||||||||||||||||||||| |
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|
| T |
9853031 |
tctatgacagggatgtgagcaattt |
9853007 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 9842109 - 9841988
Alignment:
| Q |
60 |
tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatt |
159 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||| |
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|
| T |
9842109 |
tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaacgggaacacaacttgtctatcatattctgacttggtggtttatc |
9842013 |
T |
|
| Q |
160 |
tgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
9842012 |
catatgacagggatgtgagcaattt |
9841988 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 10430720 - 10430786
Alignment:
| Q |
14 |
agcataggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc |
80 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10430720 |
agcagaggacccatgagatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc |
10430786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 10666742 - 10666665
Alignment:
| Q |
107 |
tacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
10666742 |
tacctgaaacaggaacacaactcgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattt |
10666665 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 10360658 - 10360740
Alignment:
| Q |
103 |
aacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||||| |
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|
| T |
10360658 |
aacatacctgaaaacgggaacacaacttgtctatcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattt |
10360740 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 10372768 - 10372850
Alignment:
| Q |
103 |
aacatacctgaaat-gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || || ||||||| |||||| |||||||||||||||| |
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|
| T |
10372768 |
aacatacctgaaaacgggaacacaacttgtctatcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattt |
10372850 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 10430914 - 10430980
Alignment:
| Q |
118 |
ggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||| |
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|
| T |
10430914 |
ggaacacaacttgtctatcatattgtgacttcatcatttatatctatgacagggatgtgagcaattt |
10430980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 10531989 - 10531911
Alignment:
| Q |
105 |
catacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| |||| | |||||| ||||||||||||||||| ||||| |
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|
| T |
10531989 |
catacctgaaacgggaacacaacttgtct-tcatattgtaacttgcttgtttattattatgacagggatgtgagaaattt |
10531911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 11778855 - 11778921
Alignment:
| Q |
117 |
gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||| | |||||||| |||||||||||||||||| |||| |
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|
| T |
11778855 |
gggaacacagcttgt-tctcatattgtgactttttcatttatttctatgacagggatgtgagcgattt |
11778921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 11772430 - 11772364
Alignment:
| Q |
117 |
gggaacacaacttgtctatcatattgtgactttgtaatttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||| | |||||| | |||||||||||||||||| |||| |
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|
| T |
11772430 |
gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattt |
11772364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 184
Target Start/End: Complemental strand, 26910049 - 26910018
Alignment:
| Q |
153 |
atttatttgtatgacagggatgtgagcaattt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26910049 |
atttatttgtatgacagggatgtgagcaattt |
26910018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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