View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10501_low_9 (Length: 388)
Name: NF10501_low_9
Description: NF10501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10501_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 41287305 - 41286949
Alignment:
| Q |
21 |
cacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagctt |
120 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41287305 |
cacatcctccttccagcaccaaatggtatgtattcgaagtctgtgccattgaaatcaattggactattaacaaacctctcgggtttgaaattctcagctt |
41287206 |
T |
|
| Q |
121 |
cgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatact |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41287205 |
cgacccaatatcttggatctcttccaattgcccaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcatact |
41287106 |
T |
|
| Q |
221 |
ttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatccaca |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
41287105 |
ttctcttggaatcaacaatggtatagcaggatgcaacctcattgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcaaccaca |
41287006 |
T |
|
| Q |
321 |
tacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
||||||||| ||||||||| ||||||| | ||||||||||||| |||||| ||||||| |
|
|
| T |
41287005 |
tacccctttctatcaaacactcttcttacctcagcttgtgctt-ttccatcacctttg |
41286949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 41333115 - 41332756
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||| ||||| ||||||||||| ||||||| ||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
41333115 |
gacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaattcaattgtgctattaacaaacctctcaggtttaaaactctcagc |
41333016 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| |||||||| |||| |||||||||||| ||| ||||||| || | ||||| ||||| || ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
41333015 |
ttcaacccaataccttgaatctcttccaatagcccaagcattaaccattacccttgtcttagctgggatttcatacccattaatttggcatggcttcata |
41332916 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
|||||||||||||| ||||||||| | |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41332915 |
ctttctcttggaattaacaatggtgcaacgggatgtaacctcaatgtttctttgacgacagactttaagtatatcaattggtgcaactctgactcatcca |
41332816 |
T |
|
| Q |
319 |
catacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
41332815 |
catacccctttttatcaaacactcttcttacttcaatctgtgcttcttccaatacctttg |
41332756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 41317141 - 41316782
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
41317141 |
gacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagc |
41317042 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| |||||||| ||||||||||||||||| ||| ||||||||||| |||||| |||||||| || || ||||| ||||| ||||||||| || | || |
|
|
| T |
41317041 |
ttcaacccaataccttggatctcttccaatagcccaagcattgacagcaacccttgtcttggctggaatctcataaccattgatttggcatctctcccta |
41316942 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
||||||||||||| |||||||| || ||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||||| |
|
|
| T |
41316941 |
ctttctcttggaactaacaatggagcaacaggatacaacctcaatgtttctttgatgacagactttaagtatatcaattggtacaactctgtctcatcca |
41316842 |
T |
|
| Q |
319 |
catacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
41316841 |
catatccctttttatcaaacactcttcttacttcagcttgtgcttgttccattacatttg |
41316782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 41367296 - 41366939
Alignment:
| Q |
17 |
cagacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctca |
116 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||| || || ||| ||| |
|
|
| T |
41367296 |
cagacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattcggctattaagaaatctctcaggcttaaaactcttg |
41367197 |
T |
|
| Q |
117 |
gcttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttca |
216 |
Q |
| |
|
|| || |||||||| || |||||||||||||| ||| ||||||| |||| ||||| ||||| || ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
41367196 |
gcatcaacccaatacctcggatctcttccaatagcccaagcattaacaatgacccttgtcttagctgggatatcatatctatttatttggcatggcttcg |
41367097 |
T |
|
| Q |
217 |
tactttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatc |
316 |
Q |
| |
|
||||||||||||||||||| |||||||| | | |||||||||||| |||||||||||| || || || ||||||||||||||||||||||||| ||||| |
|
|
| T |
41367096 |
tactttctcttggaatcaataatggtatagaaggatgcaacctcattgtttctttgatgacggattttaagtatatcaattggtgcaactctgtctcatt |
41366997 |
T |
|
| Q |
317 |
cacatacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacc |
374 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| | ||| |||||||| ||||||||||| |
|
|
| T |
41366996 |
cacatatccctttttatcaaacactcttcttacctcaacttgtgctgcttccattacc |
41366939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 41329182 - 41328823
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
|||||||||| || || ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
41329182 |
gacacatccttcttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattggactattaacaaacctctcaggtttaaaactctcagc |
41329083 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| |||||||| |||| |||||||||||| ||| ||||||| || | ||||| ||||| || ||||| ||||| ||||| ||||||||| || | || |
|
|
| T |
41329082 |
ttcaacccaataccttgaatctcttccaatagcccaagcattaaccattacccttgtcttagctgggatttcatacccattgatttggcatctctcccta |
41328983 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
41328982 |
ctttctcttggaactaacaatggtgcaacgggatgcaacctcaatgtttctttgatgacggactttaagtatatcaattggtgcaactctgtctcatcca |
41328883 |
T |
|
| Q |
319 |
catacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
||||| ||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
41328882 |
catactcctttttatcaaacactctacttacttcatcttgtgcttcttccattacctttg |
41328823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 41325205 - 41324846
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||| |
|
|
| T |
41325205 |
gacacatccttcttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcaggtttaaaactttcagc |
41325106 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
|| |||||||| ||||||||||||||||| ||| ||||||| || | ||||| ||||| || ||||| ||||| ||||| ||||||||| || | || |
|
|
| T |
41325105 |
atcaacccaataccttggatctcttccaatagcccaagcattaaccatgacccttgtcttagctgggatttcatacccattgatttggcatctctcccta |
41325006 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
||||||||||||| ||||| |||| || |||| | ||||| |||||| ||||| ||||| || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
41325005 |
ctttctcttggaagtaacaacggtacggttggatgtagcctcattgtttccttgatcacagattttaagtatatcaattggtgcaactctgtctcatcca |
41324906 |
T |
|
| Q |
319 |
catacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
|| ||||||| ||||||| | ||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
41324905 |
caaaccccttcctatcaaaaactcttcttacctcagcttgtgcttcttccatcacctttg |
41324846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 41337922 - 41337568
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
41337922 |
gacacatccttcttccagcaccaaatggtattaattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcaggtttaaaactctcagc |
41337823 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| || |||||||| |||||| ||||| || ||||| ||||| ||||| |||| ||| || || |
|
|
| T |
41337822 |
ttcaacccaatactttggatctcttccaattgcccaaacattgacagcaacccttgtcttagctgggatctcatacccattgatttcacatctctctcta |
41337723 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
||||||||||||| |||||| |||| | | |||| | ||| |||||||||||||| ||| |||| |||||| |||| || |||||||||| ||| || | |
|
|
| T |
41337722 |
ctttctcttggaaccaacaaaggtacagtaggatgtagcctaaatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtcta |
41337623 |
T |
|
| Q |
319 |
catacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattac |
373 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||| |
|
|
| T |
41337622 |
catacccctttttatcaaacactcttcttacctcaacttgtgcttcttccattac |
41337568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 31177695 - 31178054
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
||||||| || || || ||||| || |||||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
31177695 |
gacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaattgtgctattaacaaacctctcgggtttaaaactctcagc |
31177794 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| ||||||| ||| |||||||||||||||| || |||||| | ||| || || || || ||||| ||||| ||||| ||||||||| || || |
|
|
| T |
31177795 |
ttctgcccaatacctttcatctcttccaattgcccaaacattgatagcaactcttgttttagctgggatttcatacccattgatttggcatctctctcta |
31177894 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
|||||||||||||||||||| |||| | | |||||||||| |||||||||||||| | |||||| ||||||||||| ||||||||||||| ||||| | |
|
|
| T |
31177895 |
ctttctcttggaatcaacaaaggtaaagaaggatgcaaccttaatgtttctttgattatagactttaagtatatcaaatggtgcaactctgtttcatcga |
31177994 |
T |
|
| Q |
319 |
catacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
||| ||||||||||||||||| | ||||| |||||||||||||||| | ||||| ||||| |
|
|
| T |
31177995 |
catgcccctttttatcaaacacttttcttacttcagcttgtgcttccttcattatctttg |
31178054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 41311346 - 41310983
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||| || ||||||| |
|
|
| T |
41311346 |
gacacatcctccttccagcaccaaatggtatgtattcaaagtccgtgcctttgaattcaattgtgctattaacaaacctctcaggtttaaatctctcagc |
41311247 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| |||||||| ||||||||||||||||| ||| ||||| | | || || || ||||| ||||| |||| | ||||||||||||| || | || |
|
|
| T |
41311246 |
ttcaacccaataccttggatctcttccaatagcccaagcaataataacgactcttgtcttaattgggatctcatgcctattaatttggcatctctcccta |
41311147 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||||||| |||||||||||| ||| |||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
41311146 |
ctttctcttggaactaacaatggtgcaactggatgcaacctcagtgtttctttgatgacaaactttaagtatatcaacaggtgcaactccatctcatcca |
41311047 |
T |
|
| Q |
319 |
c----atacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
| |||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
41311046 |
catatatacccctttttatcaaacactcttcttacttcaacttgtgcttcttccattacctttg |
41310983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 31187758 - 31188117
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
||||||| || || || ||||| || |||||||||||||| | |||||||||||||||||||| ||||| | ||||||||| ||||| ||| ||||||| |
|
|
| T |
31187758 |
gacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcaggtttaaaactctcagc |
31187857 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| ||||||| ||| |||||||||||||||| || |||||| | ||| || || || || ||||| ||||| ||||| ||||||||| || || |
|
|
| T |
31187858 |
ttctgcccaatacctttcatctcttccaattgcccaaacattgatagcaactcttgttttagctgggatttcatacccattgatttggcatctctctcta |
31187957 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
||||||||||||| |||||| || | | | |||| | ||||||||||||| |||| | |||||| ||||||||||||||||||||||||| ||||| | |
|
|
| T |
31187958 |
ctttctcttggaaccaacaaaggcacagaaggatgtagcctcaatgtttctctgattatagactttaagtatatcaattggtgcaactctgtttcatcga |
31188057 |
T |
|
| Q |
319 |
catacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
31188058 |
catacccctttttatcaaacacttttcttacttcagcttgtgctttctccattatctttg |
31188117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 41305453 - 41305243
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
41305453 |
gacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcagc |
41305354 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| |||||||| |||||||||||||||| ||| |||||||||||| |||||||||||| || || |||||||| |||| |||||||| || | || |
|
|
| T |
41305353 |
ttcaacccaatactttggatctcttccaatcgcccaagcattgacaataaccctagtcttagctggaatatcatactcattgatttggcaactctcccta |
41305254 |
T |
|
| Q |
219 |
ctttctcttgg |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
41305253 |
ctttctcttgg |
41305243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 31226020 - 31225661
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
||||||| || || || ||||| || |||||||||||||| | |||||||||||||||||||| ||||| | ||||||||| ||||| ||| ||||||| |
|
|
| T |
31226020 |
gacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcaggtttaaaactctcagc |
31225921 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| ||||||| ||| |||||||||||||||| || |||||| | ||| || || || || ||||| ||||| ||||| ||||||||| || || |
|
|
| T |
31225920 |
ttctgcccaatacctttcatctcttccaattgcccaaacattgatagcaactcttgttttagctgggatttcatacccattgatttggcatctctctcta |
31225821 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
||||||||||||| |||||| ||| | |||| || |||||||||||| | || | |||||| |||||||| |||||||||||||||| ||||| | |
|
|
| T |
31225820 |
ctttctcttggaaccaacaaaggtgcagatggatgtaatctcaatgtttctctaattatagactttaagtatattaattggtgcaactctgtttcatcga |
31225721 |
T |
|
| Q |
319 |
catacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
31225720 |
catgtccctttttatcaaacatgtttcttacttcagcttgtgcttcctccattatctttg |
31225661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 263 - 370
Target Start/End: Complemental strand, 41432112 - 41432005
Alignment:
| Q |
263 |
tgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatccacatacccctttttatcaaacattcttcttgcttcagcttgtgct |
362 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||| | ||||||||||||||| || ||||||||| ||||||| | |||||||||||| |
|
|
| T |
41432112 |
tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaacactcttcttacctcagcttgtgct |
41432013 |
T |
|
| Q |
363 |
tcttccat |
370 |
Q |
| |
|
|||||||| |
|
|
| T |
41432012 |
tcttccat |
41432005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 41369979 - 41369921
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatca |
77 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
41369979 |
gacacatcctcctccctgcatcaaatggtatgtattcaaagtctatacctttgaaatca |
41369921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 14235962 - 14235910
Alignment:
| Q |
318 |
acatacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccat |
370 |
Q |
| |
|
|||||||||||| |||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
14235962 |
acatacccctttctatcaaactcccttcttacctcagcttgtgcttcttccat |
14235910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 17248575 - 17248934
Alignment:
| Q |
19 |
gacacatcctcctccctgcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattggactattaacaaacctctcgggtttgaaattctcagc |
118 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||| || | ||||||||||||||||||| ||||||| |||||| || ||||||||| ||||||| |
|
|
| T |
17248575 |
gacaaatcctccttccagcaccaaatggtatgtattcgaaattcatgcctttgaaatcaattgggctattaaaaaacctttcaggtttgaaactctcagc |
17248674 |
T |
|
| Q |
119 |
ttcgacccaatatcttggatctcttccaattgccaaagcattgacaagaaccctagtcttggccgggatatcatatccattaatttggcatggcttcata |
218 |
Q |
| |
|
||| |||||||| ||| ||||||||||||||||| || |||| ||| |||||| ||||| || || |||||||| || || ||| | ||| | | || |
|
|
| T |
17248675 |
ttcaacccaatacctttgatctcttccaattgcccaaacattaacagcaacccttgtcttagctggaatatcatacccgttgattcgacatttttcccta |
17248774 |
T |
|
| Q |
219 |
ctttctcttggaatcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgactcatcca |
318 |
Q |
| |
|
|||| ||| |||||||||||||||| | |||||| ||||| |||||||||||| ||||| || |||||||| ||||| | |||||| | ||||| | |
|
|
| T |
17248775 |
ctttgtctaggaatcaacaatggtacaataggatgcagcctcagtgtttctttgatgacagaatttaagtatattaattgatccaactccgtttcatcta |
17248874 |
T |
|
| Q |
319 |
catacccctttttatcaaacattcttcttgcttcagcttgtgcttcttccattacctttg |
378 |
Q |
| |
|
||||||||||| ||||||| | |||||| | |||||||||||| ||||||| ||||||| |
|
|
| T |
17248875 |
catacccctttctatcaaaaacacttcttacctcagcttgtgctgcttccatcacctttg |
17248934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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