View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10502_high_2 (Length: 337)
Name: NF10502_high_2
Description: NF10502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10502_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 3608616 - 3608732
Alignment:
| Q |
102 |
actatattagactttctcattagtaggtcataaaatttgacttcgagttaactaacaaagattgatatgaaatataggcaacaagtgtggtgaatgtaca |
201 |
Q |
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| T |
3608616 |
actatattagactttctccttagtaggtcataaaatttgacttcgagttaactaacaaagattgatatgaaatataggcaataagtgtggtgaatgtaca |
3608715 |
T |
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| Q |
202 |
aaaatacaaaggtgcgc |
218 |
Q |
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| T |
3608716 |
aaaatacaaaggtgcgc |
3608732 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 3608799 - 3608847
Alignment:
| Q |
285 |
tgattctaaacaatgcaatcaagatccaagattatattttcacccccta |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3608799 |
tgattctaaacaatgcaatcaagatccaagattatattttcacccccta |
3608847 |
T |
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