View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10502_high_3 (Length: 289)
Name: NF10502_high_3
Description: NF10502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10502_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 48922765 - 48923037
Alignment:
| Q |
1 |
acaacatgtgctgcagttaatctgcaacttcttattttttgtatatgctgcataaagagcaacagataaatagaagtataaaattagtaatgttatgtca |
100 |
Q |
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| T |
48922765 |
acaacatgtgctgcagttaatctgcaacttcttattttttgtatatgctgcataaagagcaacagataaatagaagtataaaattagtaatgttatgtca |
48922864 |
T |
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| Q |
101 |
tatttcttacttcaatttttctgtatcagtttgatcaataaaaatagttttggtgctcgaagataactgaccattactttttgccactaatatatgccac |
200 |
Q |
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| T |
48922865 |
tatttcttacttcaatttttctgtatcagtttgatcaataaaaatagttttggtgctcgaagataactgaccattactttttgccactaatatatgccac |
48922964 |
T |
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| Q |
201 |
atgaccaaaataaatgatataaattaaatccatctttcaccaaaaaacaaacaaaatccatgtcagtaaaatt |
273 |
Q |
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| T |
48922965 |
atgaccaaaataaatgatataaattaaatccatctttcaccaaaaaacaaacaaaatccatgtcagtaaaatt |
48923037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 48923085 - 48923131
Alignment:
| Q |
224 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatgtcagtaaa |
270 |
Q |
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| T |
48923085 |
ttaaatccatctttcaccaaaaaacaaacaaaatccatatcagtaaa |
48923131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 48875995 - 48875959
Alignment:
| Q |
178 |
tttttgccactaatatatgccacatgaccaaaataaa |
214 |
Q |
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| T |
48875995 |
tttttgccactaatgtaggccacatgaccaaaataaa |
48875959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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