View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10502_low_12 (Length: 225)
Name: NF10502_low_12
Description: NF10502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10502_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 56012666 - 56012883
Alignment:
| Q |
1 |
tttcaggcttttttggcttctctggttctttgggcttttcaggctctttgggcttgacgggttccttgggcttttctggttctttaggcttgggaggtgg |
100 |
Q |
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| T |
56012666 |
tttcagggttttttggcttctctggttctttgggcttttcaggctctttgggcttgacgggttccttgggcttttctggttctttaggcttgggaggtgg |
56012765 |
T |
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| Q |
101 |
aggaggttcgacaatttctatgcttttgatggcaccacaacctttgcaacaaatcttgtctcttatcttctcggggctacaacaaaccactgtgattgtc |
200 |
Q |
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| T |
56012766 |
aggaggttcgacaatttctatgcttttgatggcaccacaacctttgcaacaaatcttgtctcttatcttctcggggctacaacaaaccactgtgattgtc |
56012865 |
T |
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| Q |
201 |
acgatgttgttcatctca |
218 |
Q |
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|||||||||||| ||||| |
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| T |
56012866 |
acgatgttgttcttctca |
56012883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 56012583 - 56012648
Alignment:
| Q |
26 |
ttctttgggcttttcaggctctttgggcttgacgggttccttgggcttttctggttctttaggctt |
91 |
Q |
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| T |
56012583 |
ttctttgggtttctcaggctctttgggcttttcaggctccttgggcttttcaggttctttgggctt |
56012648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 19923853 - 19923767
Alignment:
| Q |
105 |
ggttcgacaatttctatgcttttgatggcaccacaacctttgcaacaaatcttgtctcttatcttctcggggctacaacaaaccact |
191 |
Q |
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| T |
19923853 |
ggttcaactatttctatgcttttgatggtaccacccccttgacaacaaatattgtctcttaccttctctgggctgcagcacaccact |
19923767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 9687542 - 9687636
Alignment:
| Q |
114 |
atttctatgcttttgatggcaccacaacctttgcaacaaatcttgtctcttatcttctcggggctacaacaaaccactgtgattgtcacgatgtt |
208 |
Q |
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| T |
9687542 |
atttcaatgctcttgatagaacctccacctttgtaacaaagcttgtccctaatcttctcaggactacaacacaccaccgtgattgtcacaatgtt |
9687636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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