View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10502_low_2 (Length: 411)
Name: NF10502_low_2
Description: NF10502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10502_low_2 |
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| [»] scaffold0695 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 6644217 - 6644545
Alignment:
| Q |
19 |
atacatgcatccacgttggagaaat--cctcttggccaatttcatgatccttgctcctaaataactaaaataagtatgattatctttggttaataatcat |
116 |
Q |
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| T |
6644217 |
atacatgcatccacgttggagaaatatcctcttggccaatttcatgatccttgctcctaaataactaaaataagtatgattatctttggttaataatcat |
6644316 |
T |
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| Q |
117 |
gtcttcacaggagaataatgaagtg-cactaagagaatctgaaaaagtaaacctaatttgagttgctttaaacaactttcaacggggtctaaatcaattt |
215 |
Q |
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| T |
6644317 |
gtcttcacaggagaataatgaagtgacactaagagaatctgaaaaagtaaacctaatttgagttgctttaaacaactttcaacggggtctaaatcaattt |
6644416 |
T |
|
| Q |
216 |
taagaacatttgtatctcaaccttcaactctcctta------tctctctctcaagccccttttctcatttaatttgaaacaaccactgctcttagttaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6644417 |
taagaacatttgtatctcaaccttcaactctccttatctctctctctctctcaagccccttttctcatttaatttgaaacaaccactgctcttagttaaa |
6644516 |
T |
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| Q |
310 |
aggaatggtagttacacattacaatcaca |
338 |
Q |
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| T |
6644517 |
aggaatggtagttacacattacaatcaca |
6644545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 20217406 - 20217358
Alignment:
| Q |
339 |
atcaaatggaacgttggctcgatttctctatgcatgcaagttaattgta |
387 |
Q |
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| T |
20217406 |
atcaaatggaaggttagttcgatttctctatgcatgcaagttaattgta |
20217358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 387
Target Start/End: Original strand, 35987690 - 35987735
Alignment:
| Q |
342 |
aaatggaacgttggctcgatttctctatgcatgcaagttaattgta |
387 |
Q |
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| T |
35987690 |
aaatggaaggttagttcgatttctctatgcatgcaagttaattgta |
35987735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 14091453 - 14091407
Alignment:
| Q |
339 |
atcaaatggaacgttggctcgatttctctatgcatgcaagttaattg |
385 |
Q |
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| T |
14091453 |
atcaaatggaaggttagttcgatttctctacgcatgcaagttaattg |
14091407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 14126797 - 14126769
Alignment:
| Q |
357 |
tcgatttctctatgcatgcaagttaattg |
385 |
Q |
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| T |
14126797 |
tcgatttctctatgcatgcaagttaattg |
14126769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0695 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0695
Description:
Target: scaffold0695; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 3832 - 3860
Alignment:
| Q |
357 |
tcgatttctctatgcatgcaagttaattg |
385 |
Q |
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| T |
3832 |
tcgatttctctatgcatgcaagttaattg |
3860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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