View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10502_low_3 (Length: 408)

Name: NF10502_low_3
Description: NF10502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10502_low_3
NF10502_low_3
[»] chr5 (1 HSPs)
chr5 (19-397)||(40265251-40265629)
[»] chr7 (2 HSPs)
chr7 (131-186)||(36101777-36101833)
chr7 (131-186)||(9210704-9210760)
[»] chr4 (3 HSPs)
chr4 (155-189)||(51811277-51811311)
chr4 (131-186)||(15665327-15665383)
chr4 (131-186)||(29399030-29399086)
[»] chr2 (2 HSPs)
chr2 (129-186)||(12734924-12734982)
chr2 (135-186)||(28960211-28960263)
[»] chr8 (1 HSPs)
chr8 (120-187)||(45419450-45419518)


Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 40265629 - 40265251
Alignment:
Q  19 aggggggtgttaagagttcgacattagataagataaaccgtaaatatgagtttataggtagaagcggccctcccccaaacgaactctaactaacttttct 118  Q
    |||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40265629 agggggatgttaagagttccacgttagataagataaaccgtaaatatgagtttataggtagaagcggccctcccccaaacgaactctaactaacttttct 40265530  T
Q  119 taacattaaagtgtaatttgattcatatagttgactccacttagggggataaggcttgttgttgttgtaattagtcagaagttgtgttttcctatggcaa 218  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40265529 taacattaaagtgtaatttgatccatatagtcgactccacttagggggataaggcttgttgttgttgtaattagtcagaagtcgtgttttcctatggcaa 40265430  T
Q  219 cacctctttgtgttgcaacatagattactgctaccagttaaccaatatatgcatgcattctattcaactaattaccatgactttcttttacataggttgc 318  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40265429 cacttctttgtgttgcaacatagattactgctaccagttaaccaatatatgcatgcattctattcaactaattaccatgactttcttttacataggttgc 40265330  T
Q  319 aatagctttgccattcaaatatggcagacattgctctctccgttgcagccaaggtttcagaatatttggtcaagccttt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40265329 aatagctttgccattcaaatatggcagacattgctctctccgttgcagccaaggtttcagaatatttggtcaagccttt 40265251  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 36101833 - 36101777
Alignment:
Q  131 gtaatttgattcatatagttgactccacttagggggataaggctt-gttgttgttgt 186  Q
    |||||||||| ||| |||||||| |||||||| |||||||||||| |||||||||||    
T  36101833 gtaatttgatccatgtagttgaccccacttagtgggataaggcttggttgttgttgt 36101777  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 9210760 - 9210704
Alignment:
Q  131 gtaatttgattcatatagttgactccacttagggggataaggctt-gttgttgttgt 186  Q
    |||||||||| ||| ||| |||| |||||||| |||||||||||| |||||||||||    
T  9210760 gtaatttgatccatgtagctgaccccacttagtgggataaggcttcgttgttgttgt 9210704  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 51811311 - 51811277
Alignment:
Q  155 ccacttagggggataaggcttgttgttgttgtaat 189  Q
    |||||||| ||||||||||||||||||||||||||    
T  51811311 ccacttagtgggataaggcttgttgttgttgtaat 51811277  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 15665327 - 15665383
Alignment:
Q  131 gtaatttgattcatatagttgactccacttagggggataaggctt-gttgttgttgt 186  Q
    |||||||||| ||| ||| |||| |||||||| |||||||||||| |||||||||||    
T  15665327 gtaatttgatccatgtagctgaccccacttagtgggataaggcttggttgttgttgt 15665383  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 29399030 - 29399086
Alignment:
Q  131 gtaatttgattcatatagttgactccacttagggggataaggctt-gttgttgttgt 186  Q
    |||||||||||||| ||| |||| |||||||| |||| ||||||| |||||||||||    
T  29399030 gtaatttgattcatgtagctgaccccacttagtgggaaaaggcttggttgttgttgt 29399086  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 12734924 - 12734982
Alignment:
Q  129 gtgtaatttgattcatatagttgactccacttagggggataaggctt-gttgttgttgt 186  Q
    |||||||||||| ||| |||| ||| |||||||| |||||||||||| |||||||||||    
T  12734924 gtgtaatttgatccatgtagtcgaccccacttagtgggataaggcttggttgttgttgt 12734982  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 28960263 - 28960211
Alignment:
Q  135 tttgattcatatagttgactccacttagggggataaggctt-gttgttgttgt 186  Q
    |||||||||| |||| ||||||| |||| |||||||||||| |||||||||||    
T  28960263 tttgattcatgtagtcgactccatttagtgggataaggcttggttgttgttgt 28960211  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 45419450 - 45419518
Alignment:
Q  120 aacattaaagtgtaatttgattcatatagttgactccacttagggggataaggctt-gttgttgttgta 187  Q
    |||||||  |||||||||||| ||| |||  ||| |||||||| |||||||||||| ||||||||||||    
T  45419450 aacattatggtgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 45419518  T

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