View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10502_low_4 (Length: 395)
Name: NF10502_low_4
Description: NF10502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10502_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 40277453 - 40277089
Alignment:
| Q |
15 |
ggacgatccatattttctatggtggaagatattagtcttgctctttcggcttcatcaaatcttatattcaaggagtcagcaatttcatcttgcattgctg |
114 |
Q |
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| T |
40277453 |
ggacgatccatattttctatggtggaagatattagtcttgctctttcggcttcatcaaatctaatattcaaggagtcagcaatttcatcttgcattgctg |
40277354 |
T |
|
| Q |
115 |
tgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttacc |
214 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40277353 |
tgatatttgggtttttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttacc |
40277254 |
T |
|
| Q |
215 |
agatccctgcttaccatacaacccaatcatagaacaatcatcatccttcaatgcctctaaaagttgatctgaagtctcctctctagacttaaaacacata |
314 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40277253 |
agatccctgcttaccatacaagccaatcatagaacaatcatcatccttgaatgcctctaaaagttgatctgaagtctcctctctagacttaaaacacata |
40277154 |
T |
|
| Q |
315 |
atatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacattt |
379 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40277153 |
atatttccattagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacattt |
40277089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 12 - 379
Target Start/End: Complemental strand, 40376610 - 40376231
Alignment:
| Q |
12 |
ataggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatattcaaggagtcagcaatttcat |
102 |
Q |
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|||||| |||||||||||||||| ||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
40376610 |
ataggatgatccatattttctattgtggataatatttttcttgctctttcagcttcactgtttctatcaaatcttatattcaaggagtcagcaatttcat |
40376511 |
T |
|
| Q |
103 |
cttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgctttcaccaa |
202 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||| || ||||||||||||||||| || ||||||| |
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| T |
40376510 |
cttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatatttaaaaacatgactttctcacccattactctcaccaa |
40376411 |
T |
|
| Q |
203 |
tgctgttttaccagatccctgcttaccatacaacccaatcatagaacaatcatcatccttcaatgcctctaaaagttgatctgaagtctcctctctagac |
302 |
Q |
| |
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|| ||||||||||| | || |||| ||||| || || ||| ||||| |||||| | || ||| || ||||||| |||||||| || |||| | ||| |
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| T |
40376410 |
tgtagttttaccagagtcacgcctaccgtacaatcctattatacgacaattatcatcttgcagtgcttccaaaagttcatctgaagccttctctgtcgac |
40376311 |
T |
|
| Q |
303 |
ttaaaacac---ataatatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacattt |
379 |
Q |
| |
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|| |||||| | | |||||||| ||| ||||| ||||||||||||||| | |||||||||| ||||| | |||||| |
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| T |
40376310 |
ttgaaacactcaaaattatttcctaaagagaagtgttctaaacttggaattataattgaaaatggatcaaaattacattt |
40376231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 88 - 380
Target Start/End: Original strand, 40598208 - 40598500
Alignment:
| Q |
88 |
agtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacc |
187 |
Q |
| |
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||||||||||||| |||||||| | | ||||||| || ||| ||||| || ||||||||| ||||||||||| |||| || ||| ||||||||||| |
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| T |
40598208 |
agtcagcaatttcttcttgcatagttctgatattcaggttttgcgtcaccgtggcaaataaaacctcatgaaaaatctttagatgcttaactttctcacc |
40598307 |
T |
|
| Q |
188 |
cattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcatagaacaatcatcatccttcaatgcctctaaaagttgatctgaa |
287 |
Q |
| |
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||||||||| |||| ||||| |||||||| |||| |||||||||| ||||||||||| |||| |||||| || ||||||||||| |||||||||| |
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| T |
40598308 |
cattgcttttgccaacgctgtcttaccagagcccttgctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaa |
40598407 |
T |
|
| Q |
288 |
gtctcctctctagacttaaaacacataatatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacatttt |
380 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||| |
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| T |
40598408 |
gtcttatctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcatttt |
40598500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 68 - 379
Target Start/End: Complemental strand, 40386790 - 40386476
Alignment:
| Q |
68 |
atcaaatcttatattcaaggagtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatattt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||| |
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| T |
40386790 |
atcaaatcttatattcaaggagtcagcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatattc |
40386691 |
T |
|
| Q |
168 |
aaatacttgactttctcacccattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcatagaacaatcatcatccttcaatg |
267 |
Q |
| |
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||||| | |||||||| ||||| |||||||||| | ||||||||||| | || |||| ||||| || |||||| |||||| |||||| | || || |
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| T |
40386690 |
aaatattggactttctgttccattactttcaccaacgtagttttaccagagtcacgcctaccgtacaatcctatcatacaacaattatcatcttgcagtg |
40386591 |
T |
|
| Q |
268 |
cctctaaaagttgatctgaagtctcctctctagacttaaaacac---ataatatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgg |
364 |
Q |
| |
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|||| ||||||| |||||||| || ||| | ||||| |||||| | | |||||||| ||| ||||| ||||||||||||||| |||||||||||| |
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| T |
40386590 |
cctccaaaagttcatctgaagccttctccgtcgacttgaaacactcgaaattatttcctaaagagaagtgttctaaacttggaattgtagttgaaaatgg |
40386491 |
T |
|
| Q |
365 |
gtcaaattcacattt |
379 |
Q |
| |
|
||||| | |||||| |
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| T |
40386490 |
ctcaaaattacattt |
40386476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 72 - 379
Target Start/End: Complemental strand, 40333508 - 40333198
Alignment:
| Q |
72 |
aatcttatattcaaggagtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaat |
171 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||| |||| |
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|
| T |
40333508 |
aatcttatattcaagaagtcagcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatattcaaat |
40333409 |
T |
|
| Q |
172 |
acttgactttctcacccattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcatagaacaatcatcatccttcaatgcctc |
271 |
Q |
| |
|
| | |||||||| ||||| |||||||||| | ||||||||||| | || |||| ||||| || |||||| |||||| |||||| | || |||||| |
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|
| T |
40333408 |
attggactttctgttccattactttcaccaacgtagttttaccagagtcacgcctaccgtacaatcctatcatacaacaattatcatcttgcagtgcctc |
40333309 |
T |
|
| Q |
272 |
taaaagttgatctgaagtctcctctctagacttaaaacac---ataatatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatgggtca |
368 |
Q |
| |
|
||||||| |||||||| || ||| | ||||| |||||| | | |||||||| ||| ||||| ||||||||||||||| |||||||||||| ||| |
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| T |
40333308 |
caaaagttcatctgaagccttctccgtcgacttgaaacactcgaaattatttcctaaagagaagtgttctaaacttggaattgtagttgaaaatggatca |
40333209 |
T |
|
| Q |
369 |
aattcacattt |
379 |
Q |
| |
|
|| | |||||| |
|
|
| T |
40333208 |
aaattacattt |
40333198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 288
Target Start/End: Original strand, 40257607 - 40257737
Alignment:
| Q |
158 |
aaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcatagaacaatcatca |
257 |
Q |
| |
|
|||||| |||||||||||| |||||||||| | |||||||||||| |||||||||||| |||| ||| ||||| || ||||| ||| | |||| | | |
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|
| T |
40257607 |
aaaaatctttaaatacttggctttctcaccaactgctttcaccaactttgttttaccagagcccttcttcccatataatccaattatatagcaattaccg |
40257706 |
T |
|
| Q |
258 |
tccttcaatgcctctaaaagttgatctgaag |
288 |
Q |
| |
|
|| | || |||||| ||||||||||| |||| |
|
|
| T |
40257707 |
tcttgcagtgcctccaaaagttgatccgaag |
40257737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 379
Target Start/End: Complemental strand, 40310472 - 40310359
Alignment:
| Q |
266 |
tgcctctaaaagttgatctgaagtctcctctctagacttaaaacacataatatttcctttagaaaagtgctctaaacttggaattcgagttgaaaatggg |
365 |
Q |
| |
|
|||||| |||||| |||||||||||| | | ||| || |||||| | || |||||| ||| ||||||||||||||||||||| || | ||||||| |
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| T |
40310472 |
tgcctccaaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggc |
40310373 |
T |
|
| Q |
366 |
tcaaattcacattt |
379 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
40310372 |
tcaaactcacattt |
40310359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 40325898 - 40325801
Alignment:
| Q |
120 |
tttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttaccaga |
217 |
Q |
| |
|
|||||| ||| || |||| ||| |||||||| ||||| ||||| || | |||||| |||||||| ||| ||||||||| |||| |||||||||||| |
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| T |
40325898 |
tttgggttttgggacacattgataaataaaacttcatcaaaaaacttggagtacttggctttctcagccactgctttcactaatgttgttttaccaga |
40325801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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