View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10502_low_6 (Length: 303)
Name: NF10502_low_6
Description: NF10502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10502_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 23985553 - 23985272
Alignment:
| Q |
18 |
agcctatagggtgacatgaaacgatgggatgaaagtatttctaagctaattaagccagttgaactctaggatttgacatgaacttcatggtcttctaaat |
117 |
Q |
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| T |
23985553 |
agcctatagggtgacatgaaacgatgggatgaaagtttttctaagctaattaagccagttgaactctaggatttgacatgaacttcatggtcttctaaat |
23985454 |
T |
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| Q |
118 |
cactattatattactactatcatagttctaaattgcggtccacaacttaccgtcgcaacatatgcatttgtctatattttctatcgcaatacaaatgttt |
217 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |
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| T |
23985453 |
cactattatattactactatcatggttttaaattgcggttcacaacttaccgtcgcaacgtatgcatttgtctatattttctatctcaatccaaatgttt |
23985354 |
T |
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| Q |
218 |
gcatgtaagttatagttttcaaattcatgtatatattctagaaaactaacacattctaaagagtttggaatctatgcttctc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23985353 |
gcatgtaagttatagttttcaaattcatgtatatattctaaaaaactaacacattctaaagagtttggaatctatgattctc |
23985272 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 8196667 - 8196738
Alignment:
| Q |
220 |
atgtaagttatagttttcaaattcatgtatatattctagaaaactaacacattctaaagagtttggaatcta |
291 |
Q |
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|||||||||||||| |||| ||| |||| || |||||||||||| ||||||| |||||| |||||||||| |
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| T |
8196667 |
atgtaagttatagtcttcacatttatgtttacattctagaaaaccaacacatcataaagatcttggaatcta |
8196738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 19672232 - 19672191
Alignment:
| Q |
224 |
aagttatagttttcaaattcatgtatatattctagaaaacta |
265 |
Q |
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||||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
19672232 |
aagttatagttttcacattcatgtttatattctaaaaaacta |
19672191 |
T |
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