View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10502_low_7 (Length: 302)
Name: NF10502_low_7
Description: NF10502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10502_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 96 - 284
Target Start/End: Complemental strand, 43103084 - 43102887
Alignment:
| Q |
96 |
atcttgcacaagttgccaatagaaaaagaacccctttagacggagcccaagacatcaacctaaccaagga---------cctcagtcgtcaggaccacac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43103084 |
atcttgcacaagttgccaatagaaaaagaacccctttagacggagcccaagacatcaacctaaccaaggaaatcagagacctcagtcgtcaggaccacac |
43102985 |
T |
|
| Q |
187 |
catacccccacccctaagcaacgaatgagtaagtcgacttcactgagaacaatccaaaatgatcatgttttcaaaaccaggcatcctccttatcaaga |
284 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43102984 |
catacccccaccccctagcaaggaatgagtaagtcgacttcactaagaacaatccaaaatgatcatgttttcaaaaccaggcattctccttatcaaga |
43102887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University