View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10502_low_9 (Length: 262)
Name: NF10502_low_9
Description: NF10502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10502_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 47889424 - 47889602
Alignment:
| Q |
19 |
acaaatcattagaagtggcctttaaaacttgggcaatgtttagggagtctccctcaattaccacataacgtacacctaaaacaaagctctgataatccct |
118 |
Q |
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| T |
47889424 |
acaaatcattagaagtggcctttaaaacttgggcaatgtttagggagtctccctcaattaccacagaacgtacacctaaaacaaagctctgataatccct |
47889523 |
T |
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| Q |
119 |
gacgaaatatccaataccccataaat--tactttcagggtcggcaacatccacattgatcttaaatcaagtattaggag |
195 |
Q |
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| T |
47889524 |
gacgaaatatccaataccccataaattatactttcagggtcggcaacatccacattgatcttaaatcaagtattaggag |
47889602 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 47889631 - 47889667
Alignment:
| Q |
217 |
caccatttgagtgttaagcatcttgttgtgttcatct |
253 |
Q |
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| T |
47889631 |
caccacttgagtgttaagcaccttgttgtgttcatct |
47889667 |
T |
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