View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10503_10 (Length: 347)
Name: NF10503_10
Description: NF10503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10503_10 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 7341101 - 7341376
Alignment:
| Q |
16 |
gagaaggtcgatgagttgacaaatattccacacccctttctcttctcaaacttcccttatatattccaatcattggaannnnnnnnnnngttatcaattt |
115 |
Q |
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| T |
7341101 |
gagaaggtcgatgagttgacaaatattccacacctctttctcttctcaaacttcccttatatattccaatcattggaaattttttttt-gttatcaattt |
7341199 |
T |
|
| Q |
116 |
tctccaattattggatcaactaacatgtctttttctctaaccattttattggcctcaccttgatgacatggtttttcttcatttggtaccataacaggaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7341200 |
tctccaattattggatcaactaacatgtctttttctctaaccattttattggcctcaccttgatgacatggtttttcttcatttggtaccataacaggaa |
7341299 |
T |
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| Q |
216 |
cactttcatccaagtttgaagccgatatcttacgattgtgacttttacgcgacacttgccactttgtttccagaccc |
292 |
Q |
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| T |
7341300 |
cactttcatccaagtttgaagccgatatcttacgattgtgagttttacgcgacacttgccactttgtttccagaccc |
7341376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 24805406 - 24805371
Alignment:
| Q |
56 |
tcttctcaaacttcccttatatattccaatcattgg |
91 |
Q |
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| T |
24805406 |
tcttctcaaacttccgttatatattccaatcattgg |
24805371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 26765720 - 26765677
Alignment:
| Q |
50 |
cctttctcttctcaaacttcccttatatattccaatcattggaa |
93 |
Q |
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| T |
26765720 |
cctttctcttttcaaactttccttatatattcaaatcattggaa |
26765677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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