View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10503_13 (Length: 341)
Name: NF10503_13
Description: NF10503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10503_13 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 70 - 341
Target Start/End: Original strand, 1615406 - 1615675
Alignment:
| Q |
70 |
cctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataagggggaa |
169 |
Q |
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| T |
1615406 |
cctgtccaattttcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccataaaataagggggaa |
1615505 |
T |
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| Q |
170 |
aaaataacataagattgcgacctgcaactacagtgactgtgacatcaagtaagattttttcccatcaaacagtacttgattttgatactctgcttcatgc |
269 |
Q |
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| T |
1615506 |
aaaataacataagattgcaacctgcaaccacagtgactgtgacatc--gtaagattttttcccatcaaacaatacttgattttgatactctgcttcatgc |
1615603 |
T |
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| Q |
270 |
tatgttggtggtgttaaatttgtttaaaatagaaaactaaactgttagaagaaccaaaaagcaagataattc |
341 |
Q |
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| T |
1615604 |
tatgttggtggtgttaaatttgtttaaaatagaaaactaaactgttagaagaaccaaaaagcaagataattc |
1615675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 70 - 314
Target Start/End: Complemental strand, 24455283 - 24455046
Alignment:
| Q |
70 |
cctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaatt-caaacctagccacaccaccatccatacaataaggggga |
168 |
Q |
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| T |
24455283 |
cctgtccaaatttcatcttctcataaaagcatcactcttcatcatcttcagcgtatgaatttcaaatctagccacaccaccatccataaaatacggaaga |
24455184 |
T |
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| Q |
169 |
aaaaataa--cataagattgcgacctgcaactacagtgactgtgacatcaagtaagattttttcccatcaaacagtacttgattttgatactc-tgcttc |
265 |
Q |
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| T |
24455183 |
aaaaaaaaaacataagattgcaacctgcaaccacagtaa-----------agtaagattttttcccatcaaacaaaacttgattttgatactcctgcttc |
24455095 |
T |
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| Q |
266 |
atgctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgt |
314 |
Q |
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| T |
24455094 |
atcctatgttggtggtgttaaatttgtttaaaatagaaaactaaactgt |
24455046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 43227489 - 43227403
Alignment:
| Q |
93 |
tcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataagggggaaaaaataacataa |
181 |
Q |
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| T |
43227489 |
tcaaagcatcactctttgtcatcttcaacgtatgaattcaaacctagccacaccaccatccataaaataa--ggaaaaaaataacataa |
43227403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 48909245 - 48909326
Alignment:
| Q |
82 |
tcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataag |
163 |
Q |
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| T |
48909245 |
tcatcttctcatcaaagcctcactctccatcatcttcaacatttgaactcaagcctagcaagaccaccatccataaaataag |
48909326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 35361052 - 35361119
Alignment:
| Q |
86 |
cttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatcc |
153 |
Q |
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| T |
35361052 |
cttctcatcaaagtctcactcttcatcatcttcaacctatgaactcaaatagagccacaccaccatcc |
35361119 |
T |
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