View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10503_3 (Length: 473)
Name: NF10503_3
Description: NF10503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10503_3 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Complemental strand, 43275264 - 43274800
Alignment:
| Q |
9 |
gaagaaaatatgatggtgaaagtggaaagggatttaagaagttgttgagggaatttaacgagtcacttagtgcttttattgttggagcctatgttccctg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43275264 |
gaagaaaatatgatggtgaaagtggaaagggatttaagaagttgttgagggaatttaacgagtcacttagtgcttttattgttggagcctatgttccttg |
43275165 |
T |
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| Q |
109 |
gcttgattgggtgacccatgtttcaggattttatgcaagagcnnnnnnngtggctaaacaatttgatgaacttttggaagatgtagttgaagatcatatc |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43275164 |
gcttgattgggtgacccatgtttctggattttatgcaagagcaaaaaaagtggctaaacaatttgatgaacttttggaagatgtagttgaagatcatatc |
43275065 |
T |
|
| Q |
209 |
aatcgcgagaaaggagtcaatgaagaccatgatgactttgttgatgttttgctttggatccaaaagacagaatcacttggctttcctattgatagaacaa |
308 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43275064 |
aatcgtcagaaaggagtcaatgaagaccatgatgactttgttgatgttttgctttggatccaaaagacagaatcacttggctttcctattgatagaacaa |
43274965 |
T |
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| Q |
309 |
ttataaaagctctcctattggtaagtgtaaaattaaaatctctttcttaccctttgaatcttatgcaaattttattgaccatgtatttgtttatatttag |
408 |
Q |
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| T |
43274964 |
ttataaaagctctcctattggtaagtgtaaaattaaaatctctttgttaccctttgaatcttatgcaaattttattgaccatgtatttgtttatatttag |
43274865 |
T |
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| Q |
409 |
gacatgtttattggaggtacagacaccatatccagtttgctagagtgggaaatgactgaactcat |
473 |
Q |
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| T |
43274864 |
gacatgtttattggaggtacagacaccatatccagtttgctagagtgggaaatgactgaactcat |
43274800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 43268374 - 43268032
Alignment:
| Q |
9 |
gaagaaaatatgatggtgaaagtggaaagggatttaagaagttgttgagggaatttaacgagtcacttagtgcttttattgttggagcctatgttccctg |
108 |
Q |
| |
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||||||| ||| |||||||| ||| ||||||||| ||||| |||| ||| |||| |||| |||| |||||||| ||||||| | ||||||||| || |
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| T |
43268374 |
gaagaaagtatagtggtgaaaatgggaagggattttcaaagttattgatggattttactgagttacttggtgcttttgttgttggggactatgttccttg |
43268275 |
T |
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| Q |
109 |
gcttgattgggtgacccatgtttcaggattttatgcaagagcnnnnnnngtggctaaacaatttgatgaacttttggaagatgtagttgaagatcatatc |
208 |
Q |
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| T |
43268274 |
gcttgattggttcagccatctttcaggatattatgcaagagcaaaaaaggtggctaaacaatttgatgatcttttggagggtgttgttgaagatcatatg |
43268175 |
T |
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| Q |
209 |
aatcgcgagaaaggagtcaatgaagaccatgatgactttgttgatgttttgctttggatccaaaagacagaatcacttggctttcctattgatagaacaa |
308 |
Q |
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||| |||||||| | ||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||| |
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| T |
43268174 |
aataatccgaaaggagatagtgacgagcatgatgactttgttgaagttttgctttggatccaaagaacagaatcacttggctttcctattgacaaaacgg |
43268075 |
T |
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| Q |
309 |
ttataaaagctctcctattggtaagtgtaaaattaaaatctct |
351 |
Q |
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| T |
43268074 |
tcataaaggctctactactggtatgtgtaaaactaaaatctct |
43268032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 43310952 - 43310761
Alignment:
| Q |
22 |
tggtgaaagtggaaagggatttaagaagttgttgagggaatttaacgagtcacttagtgcttttattgttggagcctatgttccctggcttgattgggtg |
121 |
Q |
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|||||||||||| ||||||||||| ||||| || ||| |||| |||| |||| || ||||| ||||||| | ||||||||| |||||||||||| || |
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| T |
43310952 |
tggtgaaagtgggaagggatttaaaaagttattattggattttactgagttacttggtacttttgttgttggtgactatgttccttggcttgattggatg |
43310853 |
T |
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| Q |
122 |
acccatgtttcaggattttatgcaagagcnnnnnnngtggctaaacaatttgatgaacttttggaagatgtagttgaagatcatatcaatcg |
213 |
Q |
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||| ||||||| ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
43310852 |
accaatgtttctggattttatgcaagagcaaaaaaagttgctaaacagtttgatgatcttttggaggatgtagttgaagatcatatcaatcg |
43310761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 369 - 471
Target Start/End: Complemental strand, 43267639 - 43267537
Alignment:
| Q |
369 |
ttatgcaaattttattgaccatgtatttgtttatatttaggacatgtttattggaggtacagacaccatatccagtttgctagagtgggaaatgactgaa |
468 |
Q |
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|||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||| |
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| T |
43267639 |
ttatgcaaattttattgaccatatatttgtttctattcaggacatgtttattgcaggtacagacaccatatccactttgctagagtggtcaatgacagaa |
43267540 |
T |
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| Q |
469 |
ctc |
471 |
Q |
| |
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||| |
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| T |
43267539 |
ctc |
43267537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 369 - 471
Target Start/End: Complemental strand, 43287440 - 43287338
Alignment:
| Q |
369 |
ttatgcaaattttattgaccatgtatttgtttatatttaggacatgtttattggaggtacagacaccatatccagtttgctagagtgggaaatgactgaa |
468 |
Q |
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|||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||| |
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| T |
43287440 |
ttatgcaaattttattgaccatatatttgtttctattcaggacatgtttattgcaggtacagacaccatatccactttgctagagtggtcaatgacagaa |
43287341 |
T |
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| Q |
469 |
ctc |
471 |
Q |
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||| |
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| T |
43287340 |
ctc |
43287338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 349
Target Start/End: Complemental strand, 43310706 - 43310598
Alignment:
| Q |
241 |
tgactttgttgatgttttgctttggatccaaaagacagaatcacttggctttcctattgatagaacaattataaaagctctcctattggtaagtgtaaaa |
340 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||| | |||| | || || || || ||||||||||||||||| |
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| T |
43310706 |
tgactttgttgatgttttgctttggatccaaaggacagaatccctaggttttcctattgacaaaacagtcattaaggccctgttattggtaagtgtaaaa |
43310607 |
T |
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| Q |
341 |
ttaaaatct |
349 |
Q |
| |
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|||||||| |
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| T |
43310606 |
ctaaaatct |
43310598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 471
Target Start/End: Complemental strand, 43308224 - 43308134
Alignment:
| Q |
381 |
tattgaccatgtatttgtttatatttaggacatgtttattggaggtacagacaccatatccagtttgctagagtgggaaatgactgaactc |
471 |
Q |
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| T |
43308224 |
tattgaccatcaatttgtttatcttcaggacatgttttctgcaggtactgacactatatccaccttgctagagtggtcaatgacagaactc |
43308134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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