View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10503_6 (Length: 400)
Name: NF10503_6
Description: NF10503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10503_6 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 24 - 400
Target Start/End: Complemental strand, 50805099 - 50804726
Alignment:
| Q |
24 |
catataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctaca |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805099 |
catataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctaca |
50805000 |
T |
|
| Q |
124 |
ttattttaatggcaagatggttctacctacgtggttttgttaccgcttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804999 |
ttattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtg |
50804900 |
T |
|
| Q |
224 |
tcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctgctcctccacatg |
323 |
Q |
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| T |
50804899 |
ttgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtagtctctgctc--aca-atg |
50804803 |
T |
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| Q |
324 |
gtagaaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804802 |
gtagaaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcc |
50804726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 24 - 400
Target Start/End: Original strand, 50870778 - 50871151
Alignment:
| Q |
24 |
catataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctaca |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870778 |
catataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctaca |
50870877 |
T |
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| Q |
124 |
ttattttaatggcaagatggttctacctacgtggttttgttaccgcttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870878 |
ttattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtg |
50870977 |
T |
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| Q |
224 |
tcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctgctcctccacatg |
323 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
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| T |
50870978 |
ttgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtagtctctgctc--aca-atg |
50871074 |
T |
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| Q |
324 |
gtagaaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871075 |
gtagaaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcc |
50871151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 24 - 400
Target Start/End: Original strand, 19057089 - 19057462
Alignment:
| Q |
24 |
catataacttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctaca |
123 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057089 |
catatatcttaaacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctaca |
19057188 |
T |
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| Q |
124 |
ttattttaatggcaagatggttctacctacgtggttttgttaccgcttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057189 |
ttattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcaggggaatgaaattgagatttgtg |
19057288 |
T |
|
| Q |
224 |
tcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaattgtgtagtctctgctcctccacatg |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||| |
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| T |
19057289 |
tcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttgtctgtgtaaatcgtgtattctctgctc--aca-atg |
19057385 |
T |
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| Q |
324 |
gtagaaacaaatccccggagttgggtaggaccacaatgccgagactaatgtatgttatgtatgattgtaggatgtcc |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
19057386 |
gtagaaacaaatccccggagttaggtaggaccacaatgccaagactaatgtatgttatgtgtgattgtaggatgtcc |
19057462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 42348931 - 42349049
Alignment:
| Q |
136 |
caagatggttctacctacgtggttttgttaccgcttctggaaggagatttcagggctgctcttcagggg---------aatgaaattgagatttgtgtcg |
226 |
Q |
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||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
42348931 |
caagatggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgtcg |
42349030 |
T |
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| Q |
227 |
aaagtggtatgtactcttc |
245 |
Q |
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||||||||||| ||||||| |
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| T |
42349031 |
aaagtggtatgcactcttc |
42349049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 11241 - 11181
Alignment:
| Q |
35 |
aacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgtttttt |
95 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11241 |
aacaattttatatttaaatactcctttagcaaataacttcttcatctgttgtttttttttt |
11181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 40705718 - 40705780
Alignment:
| Q |
35 |
aacagttttatatttgaatactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
40705718 |
aacagttttatatttaaatactcctttagcaaataacttattcat---ttgtttgttttttgtcta |
40705780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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