View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10503_7 (Length: 394)
Name: NF10503_7
Description: NF10503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10503_7 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 52391041 - 52391245
Alignment:
| Q |
9 |
gataattgacatgatagacacactaccaaatttannnnnnngacatgatagatggtataatgccttnnnnnnnnnnnggtggtatgctattgaatata-- |
106 |
Q |
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| T |
52391041 |
gataattgacatgatagacacactaccaaaaa-aaaaatttgacatgatagatggtataatgccttaaaaaaaaa--ggtggtatgctattgaatagaat |
52391137 |
T |
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| Q |
107 |
ttgttggtcattaggaatgaaaacaagggaggagaataaatataattgttgacagaaagaggtagtagaaaataatcatcatattacaaacatggataat |
206 |
Q |
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| T |
52391138 |
atattggtcattaggaatgaaaacaagggaggagaataaatataattgttgacagaaagaggtagtagaaaataatcatcatattacaaacatggataat |
52391237 |
T |
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| Q |
207 |
tttcttta |
214 |
Q |
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|||||||| |
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| T |
52391238 |
tttcttta |
52391245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 52391502 - 52391587
Alignment:
| Q |
299 |
ttagcctccaatcatcattagtttttgtaatatcactaataagattccctcttcaagttggaacaggaattctgttccaattttgagagttt |
390 |
Q |
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| T |
52391502 |
ttagcctccaatcatcattagtttttgtaatatcactaataagattccctcttcaagttggaac------cctgttccaattttgagagttt |
52391587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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