View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10503_8 (Length: 388)
Name: NF10503_8
Description: NF10503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10503_8 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 91 - 355
Target Start/End: Original strand, 45291236 - 45291495
Alignment:
| Q |
91 |
agagtgagagatttgaggggagtattcaaaatttgaatttgaattgagtgaaacttgtctgagggttgtgcagatttggtgtttatggggtttgtctcat |
190 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45291236 |
agagtgagaggtttgaggggaggattcaaaatttgaatttgaattgagtgagacttgtctgagggttg-----atttggtgtttatggggtttgtctcat |
45291330 |
T |
|
| Q |
191 |
agcttgcaaagctgtttattttgagcttgataacagggaagattgttgaaaagcatcccnnnnnnnatgtttattgcattaaatgtttctgaaaaaagct |
290 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45291331 |
agcttgcaaagctgtttattttgagcgtgataacagggaaaattgttgaaaagcatccctttttttatgtttattgcattaaatgtttctgaaaaaagct |
45291430 |
T |
|
| Q |
291 |
ggaacagtgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45291431 |
cgaacagtgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttg |
45291495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 45290127 - 45290171
Alignment:
| Q |
20 |
agaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
64 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45290127 |
agaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
45290171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 91 - 355
Target Start/End: Original strand, 12632595 - 12632863
Alignment:
| Q |
91 |
agagtgagagatttgaggggagtattcaaaatttgaatttgaattgagtgaaacttgtctgagggttgtgcagatttggtgtttatggggtttgtctca- |
189 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12632595 |
agagtgagagatttgaggggaggatttaaaatttgaatttgaattgagtgaaacttgtctgagggttgtgcagatttggtgtttatggagtttgtctcaa |
12632694 |
T |
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| Q |
190 |
------tagcttgcaaagctgtttattttgagcttgataacagggaagattgttgaaaagcatcccnnnnnnnatgtttattgcattaaatgtttctgaa |
283 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
12632695 |
ctctcatagcttgcaaagctgtttatcttgagcgtgataacagggaagattgttgaaaagtatccctttt---atgcttattgcattaaatgtttctgaa |
12632791 |
T |
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| Q |
284 |
aaaagctggaacagtgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttg |
355 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12632792 |
aaaagctggaacagcgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttg |
12632863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 12631736 - 12631780
Alignment:
| Q |
20 |
agaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631736 |
agaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
12631780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 2776089 - 2776032
Alignment:
| Q |
91 |
agagtgagagatttgagggga-gtattcaaaatttgaatttgaattgagtgaaacttgt |
148 |
Q |
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|||||||||||||| |||||| |||| |||| ||||||||||||||||||||| ||||| |
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| T |
2776089 |
agagtgagagatttaaggggacgtat-caaattttgaatttgaattgagtgaagcttgt |
2776032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 91 - 355
Target Start/End: Complemental strand, 31606540 - 31606272
Alignment:
| Q |
91 |
agagtgagagatttgaggggagtattcaaaatttgaatttgaattgagtgaaacttgtctgagggttgtgcagatttggtgtttatggggtttgtctca- |
189 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
31606540 |
agagtgagagatttgaggggaggattcaaaatttgaatttgaattgagtgaaacttgtcagagggttgtgcagatttggtgtttatggagtttgtctcaa |
31606441 |
T |
|
| Q |
190 |
------tagcttgcaaagctgtttattttgagcttgataacagggaagattgttgaaaagcatcccnnnnnnnatgtttattgcattaaatgtttctgaa |
283 |
Q |
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|||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
31606440 |
ctctcatagcttgcaaagctgtttatcttgagcgtgatagcagggaagattgttgaaaagcatccctttt---atgcttattgcattaaatgtttctgaa |
31606344 |
T |
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| Q |
284 |
aaaagctggaacagtgatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttg |
355 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31606343 |
aaaagctggaacagcgatgggttagagggttggactgagcataagttgggcctcatttcaaattggattttg |
31606272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 31607407 - 31607363
Alignment:
| Q |
20 |
agaatcaagatacatatatcaagaatcaggaaatgaaaaacatac |
64 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31607407 |
agaatcaagatacatatatcaagaatgaggaaatgaaaaacatac |
31607363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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