View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10503_9 (Length: 356)
Name: NF10503_9
Description: NF10503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10503_9 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 47919662 - 47920007
Alignment:
| Q |
1 |
ctgcttgatgcatcaactgtggcagaagccatcagtgtgatttcatgttggtatgaggacaagactgagtggggacagcgtgttggatggatatatggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47919662 |
ctgcttgatgcatcaactgtggcagaagccatcagtgtgatttcatgttggtatgaggacaagactgagtggggacagcgtgttggatggatatatggat |
47919761 |
T |
|
| Q |
101 |
cagttactgaggatgtggtcacttgttataggatgcataatagaggatggaagtcagtttactgtgtaaccaaactagatgccttccgcggaactgctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
47919762 |
cagttactgaggatgtggtcacttgttataggatgcataatagaggatggaagtcagtttactgtgtaactaaactagacgccttccgcggaactgctcc |
47919861 |
T |
|
| Q |
201 |
catcaggttcttagatgggctactggctcagttgaaatattcttctcgaaaaacaatgcaattatggcctcccgaagaatgaaatttcttcagaggatag |
300 |
Q |
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| T |
47919862 |
catcaggttcttagatgggctactggctcagttgaaatattcttctcgaaaaacaatgcaattatggcctcccgaagaatgaaatttcttcagaggatag |
47919961 |
T |
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| Q |
301 |
cataccttaatgttggaatctatccattcactttccctcctctctg |
346 |
Q |
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| T |
47919962 |
cataccttaatgttggaatctatccattcactttccctcctctctg |
47920007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 44634866 - 44634988
Alignment:
| Q |
52 |
tatgaggacaagactgagtggggacagcgtgttggatggatatatggatcagttactgaggatgtggtcacttgttataggatgcataatagaggatgga |
151 |
Q |
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| T |
44634866 |
tatgaggataaaactgagtgggggaaaagagttggatggatatatggttcagttacagaagatgttgttaccggttacagaatgcacaatagagggtgga |
44634965 |
T |
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| Q |
152 |
agtcagtttactgtgtaaccaaa |
174 |
Q |
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| T |
44634966 |
ggtcagtttactgtgtgaccaaa |
44634988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 29917562 - 29917208
Alignment:
| Q |
1 |
ctgcttgatgcatcaactgtggcagaagccatcagtgtgatttcatgttggtatgaggacaagactgagtggggacagcgtgttggatggatatatggat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29917562 |
ctgcttgatgcatctactgtggcagaagccatcagtgtgatttcatgttggtatgaggacaagactgagtggggacagcgtgttggatggatctatggat |
29917463 |
T |
|
| Q |
101 |
cagttactgaggatgtggtcacttgttataggatgcataatagaggatggaagtcagtttactgtgtaaccaaactagatgccttccgcggaactgctcc |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||| |
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| T |
29917462 |
cagttactgaggatgtggtcactggttataggatgcataatagaggatggaagtcagtttactgtgtaactaaacgtgacgccttccgtggaactgctcc |
29917363 |
T |
|
| Q |
201 |
ca----------------------tcaggttcttagatgggctactggctcagttgaaatattcttctcgaaaaacaatgcaattatggcctcccgaaga |
278 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
29917362 |
catcaatctcactgataggttgcatcaggttcttagatgggctactggctcagttgagatattcttctctaaaaacaatgcaattatggccacccgaaga |
29917263 |
T |
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| Q |
279 |
atgaaatttcttcagaggatagcataccttaatgttggaatctatccattcactt |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29917262 |
atgaaatttcttcagaggatagcataccttaatgttggaatttatccattcactt |
29917208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 12192878 - 12192704
Alignment:
| Q |
31 |
atcagtgtgatttcatgttggtatgaggacaagactgagtggggacagcgtgttggatggatatatggatcagttactgaggatgtggtcacttgttata |
130 |
Q |
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|||||||| || ||||| |||||||| || ||||| || |||||| | | ||||||||||| || || || || || |||||||| || || |||||| |
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| T |
12192878 |
atcagtgtcatctcatgctggtatgaagataagaccgaatggggagatagagttggatggatttacgggtcggtaaccgaggatgttgtgacaggttata |
12192779 |
T |
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| Q |
131 |
ggatgcataatagaggatggaagtcagtttactgtgtaaccaaactagatgccttccgcggaactgctcccatca |
205 |
Q |
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| T |
12192778 |
gaatgcacaatagaggatggaggtctgtgtattgtgtgaccaagagggatgccttccgtggtactgctccaatca |
12192704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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