View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10503_high_1 (Length: 431)
Name: NF10503_high_1
Description: NF10503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10503_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 31855435 - 31855756
Alignment:
| Q |
4 |
tggagacatggtggccctcccacatatggtcttgtcaaccagctctttgaagaaggaaggaccaaagtgaaaccacgtccacaccctcttaatcttattc |
103 |
Q |
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| T |
31855435 |
tggagacatggtggccctcccacctatggtcttgtcaaccagctctttgaagaaggaaggaccaaagtgaaatcac---cacaccctcttaattttattc |
31855531 |
T |
|
| Q |
104 |
ctt---ctcttcctctttagattataccatgtaatactttctcaattcttttaacaaatttttgtaggaatggccagaagggtcattggaggaaacagta |
200 |
Q |
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||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31855532 |
cttattctcttcgtctctagattataccatgtaatactttctcaattcttttaacaaatttttgtaggaatggccagaagggtcattggaggaaacagtg |
31855631 |
T |
|
| Q |
201 |
caaaatgctattaagtcatgggagatggagctgacacacaagatccgcttgcaggacttcaagaccattgtccctgaaaaattcaagttctttgttaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31855632 |
caaaatgctattaagtcatgggagatggagctgacacacaagatccgcttgcaggacttcaagaccattgtccctgaaaaattcaagttctttgttaatg |
31855731 |
T |
|
| Q |
301 |
gtaagcaatgaatgattcaaatttg |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
31855732 |
gtaagcaatgaatgattcaaatttg |
31855756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 31817505 - 31817171
Alignment:
| Q |
1 |
cattggagacatggtggccctcccacatatggtcttgtcaaccagctctttgaagaaggaaggaccaaagtgaaaccacgtccacaccctcttaatctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |
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| T |
31817505 |
cattggagacatggtggccctcccacatatggtcttgtcaaccagctctttgaagaaggaaggaccaaagtgaa-ccac---cacactctcttaatctta |
31817410 |
T |
|
| Q |
101 |
ttccttctcttcctctttagattataccatgtaatactttctcaattcttttaacaaatttttgtaggaatggccagaagggtcattggaggaaacagta |
200 |
Q |
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| T |
31817409 |
tcccttctcttccctctta-attatatcatg--at-ctttctcaatt-ttgtatcaatttttt-taggtatggccagaaggatcattggaggagacagtt |
31817316 |
T |
|
| Q |
201 |
caaaatgctattaagtcatgggagatggagctgacacacaagatccgcttgcaggacttcaagaccattgtccctgaaaaattcaagttctttgttaatg |
300 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||| ||||| || |||||||| |||||||||||||| || ||| |||||||||||| |
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| T |
31817315 |
caaaatgctattaagtcatgggagatggaactctcacacaagatccggttgcaagatttcaagactattgtccctgaaaagtttaagctctttgttaatg |
31817216 |
T |
|
| Q |
301 |
gtaagcaa-tgaatgattcaaatttgtttggtatgcatctttttc |
344 |
Q |
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|||| || | ||| ||||||||||||||||| |||||||||| |
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| T |
31817215 |
gtaattaagtacatgtatcaaatttgtttggtatccatctttttc |
31817171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 20093932 - 20094064
Alignment:
| Q |
171 |
tggccagaagggtcattggaggaaacagtacaaaatgctattaagtcatgggagatggagctgacacacaagatccgcttgcaggacttcaagaccattg |
270 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||| || || || ||||||||||||||||| ||||||| | |||| ||||||| || ||||| || |
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| T |
20093932 |
tggccagaaggatcattggaggaaacagtccaaaacgccataaaatcatgggagatggagctttcacacaaaacccgcgtgcaggattttaagactataa |
20094031 |
T |
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| Q |
271 |
tccctgaaaaattcaagttctttgttaatggta |
303 |
Q |
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|||||||| || ||| ||||||||||||||| |
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| T |
20094032 |
atcctgaaaagtttaagctctttgttaatggta |
20094064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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