View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10503_low_5 (Length: 207)

Name: NF10503_low_5
Description: NF10503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10503_low_5
NF10503_low_5
[»] chr3 (28 HSPs)
chr3 (18-186)||(10431183-10431351)
chr3 (18-192)||(10360937-10361111)
chr3 (18-186)||(10034762-10034930)
chr3 (18-192)||(9841617-9841791)
chr3 (46-193)||(10129709-10129856)
chr3 (18-194)||(10263460-10263636)
chr3 (18-193)||(9852498-9852673)
chr3 (18-186)||(9980225-9980393)
chr3 (18-192)||(10520244-10520418)
chr3 (51-193)||(10372977-10373119)
chr3 (46-194)||(10583300-10583448)
chr3 (55-183)||(10503378-10503506)
chr3 (45-183)||(10192882-10193020)
chr3 (18-183)||(10666225-10666390)
chr3 (45-183)||(10085962-10086100)
chr3 (60-192)||(10091598-10091721)
chr3 (60-192)||(10198480-10198603)
chr3 (57-193)||(11772032-11772168)
chr3 (57-193)||(11779117-11779253)
chr3 (39-183)||(10531561-10531705)
chr3 (39-183)||(10680359-10680503)
chr3 (72-183)||(13852588-13852699)
chr3 (58-182)||(13163782-13163906)
chr3 (58-182)||(13173830-13173954)
chr3 (58-182)||(13346909-13347033)
chr3 (135-182)||(10892194-10892241)
chr3 (153-182)||(11128163-11128192)
chr3 (153-182)||(11157154-11157183)
[»] scaffold0083 (1 HSPs)
scaffold0083 (46-186)||(54744-54884)
[»] chr2 (1 HSPs)
chr2 (53-191)||(26909682-26909820)
[»] chr8 (2 HSPs)
chr8 (54-183)||(11487824-11487953)
chr8 (92-192)||(44954795-44954896)
[»] chr4 (1 HSPs)
chr4 (51-182)||(17850069-17850200)
[»] scaffold0002 (2 HSPs)
scaffold0002 (58-182)||(143082-143206)
scaffold0002 (58-182)||(133034-133158)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 10431351 - 10431183
Alignment:
Q  18 atatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctg 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||     
T  10431351 atatttgacagcactttccttattgacaattcaaaagggtgatgatatatttaacaccttgatgaaggagtcgttgctacccatctcccttgtgtatcta 10431252  T
Q  118 gatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaa 186  Q
     |||||| |||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10431251 tatatcactgatctctctgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctctccaa 10431183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 10361111 - 10360937
Alignment:
Q  18 atatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctg 117  Q
    |||||||||||||||||||   |||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10361111 atatttgacagcactttccaacttgggtattggaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccgtctcccttgtgtctctg 10361012  T
Q  118 gatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctc 192  Q
    || ||| || |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10361011 gaaatccatcatctctctgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctc 10360937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 10034762 - 10034930
Alignment:
Q  18 atatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctg 117  Q
    |||||||||||||||||||   ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  10034762 atatttgacagcactttccaacttgagtattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtatcta 10034861  T
Q  118 gatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaa 186  Q
     ||||||  ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10034862 tatatcagggatttcgatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaa 10034930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 9841617 - 9841791
Alignment:
Q  18 atatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctg 117  Q
    ||||||||| ||||||||||  |||  |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||     
T  9841617 atatttgacggcactttcctacttgcgaattgataagggtgatgatatatttaacaccttgatgaaggagtcgttgctacccatctcccttgtgtctcta 9841716  T
Q  118 gatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctc 192  Q
     ||||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9841717 aatatcagggatctctctgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaatatctc 9841791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 10129709 - 10129856
Alignment:
Q  46 attgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagt 145  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||  ||| || ||||||||||||    
T  10129709 attggaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtatctatatatcagggatttcgatgaaatgaagt 10129808  T
Q  146 cctttgatggaaatgggcttcgacacctctcctctctccaacatctct 193  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  10129809 cctttgatggaaatgggcttcgacacctcttctctctccaacatctct 10129856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 10263460 - 10263636
Alignment:
Q  18 atatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctg 117  Q
    ||||||||||||||||||||  ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||     
T  10263460 atatttgacagcactttcctacttgactattcaaaagggtgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttttgtatcta 10263559  T
Q  118 gatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctctg 194  Q
      | ||  |||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  10263560 cgtgtctttgatctctctgaaatgaagtcctttgatggaaatgggcttcaacacctctcctctctccaatatctctg 10263636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 9852498 - 9852673
Alignment:
Q  18 atatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctg 117  Q
    |||||||||||| ||||| | ||||   |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  9852498 atatttgacagctctttcatcattgtggattgtaaagggtgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctcta 9852597  T
Q  118 gatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctct 193  Q
     ||||||  | ||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  9852598 aatatcatggttctctctgaaatgaagtcctttgatggaaatgggcttcgacacctcttctctctccaatatctct 9852673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 9980225 - 9980393
Alignment:
Q  18 atatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctg 117  Q
    ||||||||||||||||| |   |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||     
T  9980225 atatttgacagcacttttcgacttgagaattgtaaagggtgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgcatcta 9980324  T
Q  118 gatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaa 186  Q
      ||||  |||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9980325 cgtatctgtgatctctctgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctctccaa 9980393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 10520244 - 10520418
Alignment:
Q  18 atatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctg 117  Q
    |||||||||||||||||||   |||   |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||     
T  10520244 atatttgacagcactttccgacttgggtattgtaaagggtgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgactcta 10520343  T
Q  118 gatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctc 192  Q
      |||||  ||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||    
T  10520344 actatcagggatctctctgaaatgaagtcctttgatggaaaagggcttcgtcacctctcctctctccaacgtctc 10520418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 51 - 193
Target Start/End: Complemental strand, 10373119 - 10372977
Alignment:
Q  51 aaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtccttt 150  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||   ||||||| |||||  ||||||||||||||||    
T  10373119 aaaggatgatgatatagttaacaccttgatgaaggagtcgttgctacccatctcccttgtgcatctacgtatcaattatctctctgaaatgaagtccttt 10373020  T
Q  151 gatggaaatgggcttcgacacctctcctctctccaacatctct 193  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  10373019 gatggaaatgggcttcgacacctctcctctctcaaaaatctct 10372977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 10583300 - 10583448
Alignment:
Q  46 attgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagt 145  Q
    |||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||  |||||    |||||  |||||||||||    
T  10583300 attggaaaggatgatgatatatttaacaccttgatgaaggagtcgttgctacccatctcccttgtgtatctatatatctggaatctctctgaaatgaagt 10583399  T
Q  146 cctttgatggaaatgggcttcgacacctctcctctctccaacatctctg 194  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  10583400 cctttgatggaaatgggctgcgacacctctcctctctccaatatctctg 10583448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 10503378 - 10503506
Alignment:
Q  55 ggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatg 154  Q
    |||||||||||| |||||||||||||||||||||| ||||| |||||||||||||  |||||  |||||| ||||||| |||||||||||||||||||||    
T  10503378 ggtgatgatatatttaacaccttgatgaaggagtcgttgcttcccatctcccttgcatctctatatatcagtgatctctatgaaatgaagtcctttgatg 10503477  T
Q  155 gaaatgggcttcgacacctctcctctctc 183  Q
    ||||||||||||||||  |||||||||||    
T  10503478 gaaatgggcttcgacaaatctcctctctc 10503506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 10192882 - 10193020
Alignment:
Q  45 aattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaag 144  Q
    ||||||||||| || ||||||||||||||||||| | || ||| | ||||||||||||||||||||||||||| ||||   ||||||| || | ||||||    
T  10192882 aattgaaaaggatggtgatatagttaacaccttggtaaaagagccgttgctacccatctcccttgtgtctctgaatattggtgatctctataacatgaag 10192981  T
Q  145 tcctttgatggaaatgggcttcgacacctctcctctctc 183  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  10192982 tcctttgatggaaatgggcttcaacacctctcctttctc 10193020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 10666225 - 10666390
Alignment:
Q  18 atatttgacagcactttccttattgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctg 117  Q
    ||||||||||||||||||||  ||||  ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||     
T  10666225 atatttgacagcactttcctacttgagtattgaaaagggtgatgatatatttaacaccttgatgaaggagtcgttgctacccatatcccttgtgtctcta 10666324  T
Q  118 gatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctctc 183  Q
        |||  | ||||    |  ||||||||||| ||||||||||||||| ||||||||||||||||    
T  10666325 acgttcagagctctctgcaatttgaagtcctttaatggaaatgggcttctacacctctcctctctc 10666390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 10085962 - 10086100
Alignment:
Q  45 aattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaag 144  Q
    ||||||||||| || ||||||||||||||||||| | || ||| | |||||| |||||||||||||||||||| ||||   ||||||| || | ||||||    
T  10085962 aattgaaaaggatggtgatatagttaacaccttggtaaaagagccgttgctaaccatctcccttgtgtctctgaatattggtgatctctataacatgaag 10086061  T
Q  145 tcctttgatggaaatgggcttcgacacctctcctctctc 183  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  10086062 tcctttgatggaaatgggcttcaacacctctcctttctc 10086100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 10091598 - 10091721
Alignment:
Q  60 tgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaat 159  Q
    |||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||         ||| || | |||||||||||||||||||||    
T  10091598 tgatatagttaacaacttggtgacggagtcgttgctacccatctcccttgtgtctctggat---------ctctataagatgaagtcctttgatggaaat 10091688  T
Q  160 gggcttcgacacctctcctctctccaacatctc 192  Q
    |||||||||||||||||||||||||||| ||||    
T  10091689 gggcttcgacacctctcctctctccaacgtctc 10091721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 10198480 - 10198603
Alignment:
Q  60 tgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaat 159  Q
    |||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||         ||| || | |||||||||||||||||||||    
T  10198480 tgatatagttaacaacttggtgacggagtcgttgctacccatctcccttgtgtctctggat---------ctctataagatgaagtcctttgatggaaat 10198570  T
Q  160 gggcttcgacacctctcctctctccaacatctc 192  Q
    |||||||||||||||||||||||||||| ||||    
T  10198571 gggcttcgacacctctcctctctccaacgtctc 10198603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 11772032 - 11772168
Alignment:
Q  57 tgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatgga 156  Q
    |||| ||||||| | |||||||||||| ||||  ||||| || ||||||||||||   |||  ||||| ||||||| ||||||||||||| |||||||||    
T  11772032 tgataatatagtcaccaccttgatgaaagagttgttgctgcctatctcccttgtggacctgtctatcattgatctctatgaaatgaagtcttttgatgga 11772131  T
Q  157 aatgggcttcgacacctctcctctctccaacatctct 193  Q
    |||||||||||||||||||||||||||||| ||||||    
T  11772132 aatgggcttcgacacctctcctctctccaatatctct 11772168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 11779253 - 11779117
Alignment:
Q  57 tgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatgga 156  Q
    |||| ||||||| | ||||||||||||||| |  |||||||| ||||||||||||   |||  ||||| ||||||| |||||||||||||||| ||||||    
T  11779253 tgataatatagtcaccaccttgatgaaggatttgttgctacctatctcccttgtggacctgtctatcattgatctctatgaaatgaagtccttcgatgga 11779154  T
Q  157 aatgggcttcgacacctctcctctctccaacatctct 193  Q
    ||||||||||||||||||||||||||| || ||||||    
T  11779153 aatgggcttcgacacctctcctctctcgaatatctct 11779117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 10531561 - 10531705
Alignment:
Q  39 attgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaa 138  Q
    ||||||| ||| || || ||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||   |||   | |||||  ||||    
T  10531561 attgacagttggaacggttgatgatatagttaacaccgtgctgaacgagtcattgcttcccatctcccttgtgtctctatctattggtcatctctctgaa 10531660  T
Q  139 atgaagtcctttgatggaaatgggcttcgacacctctcctctctc 183  Q
    || ||||| ||||| |||||||| |||||||||||||||||||||    
T  10531661 ataaagtcatttgaaggaaatggacttcgacacctctcctctctc 10531705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 10680359 - 10680503
Alignment:
Q  39 attgacaattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaa 138  Q
    ||||||| ||| || || ||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||   |||   | |||||  ||||    
T  10680359 attgacagttggaacggttgatgatatagttaacaccgtgctgaacgagtcattgcttcccatctcccttgtgtctctatctattggtcatctctctgaa 10680458  T
Q  139 atgaagtcctttgatggaaatgggcttcgacacctctcctctctc 183  Q
    || |||||  |||| |||||||| |||||||||||||||||||||    
T  10680459 ataaagtcacttgaaggaaatggacttcgacacctctcctctctc 10680503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 13852699 - 13852588
Alignment:
Q  72 caccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacac 171  Q
    ||||||||||||||||   ||| |||||||||||||| ||||||||  ||||     ||||  |||||||||||| || ||||||||||||||||||||     
T  13852699 caccttgatgaaggagctgttgatacccatctcccttttgtctctgtttatcggcagtctctctgaaatgaagtctttcgatggaaatgggcttcgacat 13852600  T
Q  172 ctctcctctctc 183  Q
    ||||||||||||    
T  13852599 ctctcctctctc 13852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 13163782 - 13163906
Alignment:
Q  58 gatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaa 157  Q
    |||||||| |||||||||||| ||||||||   ||||| || || || ||||||||| || ||||   | |||||  |||||| || |||||||||||||    
T  13163782 gatgatattgttaacaccttgctgaaggagcggttgctgccaatttcacttgtgtctttgtatatttctaatctctgtgaaataaaatcctttgatggaa 13163881  T
Q  158 atgggcttcgacacctctcctctct 182  Q
    |||| || |||||||| ||||||||    
T  13163882 atggactccgacacctatcctctct 13163906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 13173830 - 13173954
Alignment:
Q  58 gatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaa 157  Q
    |||||||| |||||||||||| ||||||||   ||||| || || || ||||||||| || ||||   | |||||  |||||| || ||| |||||||||    
T  13173830 gatgatattgttaacaccttgctgaaggagcggttgctgccaatttcacttgtgtctttgtatatttctaatctctgtgaaataaaatccattgatggaa 13173929  T
Q  158 atgggcttcgacacctctcctctct 182  Q
    |||| || |||||||| ||||||||    
T  13173930 atggactccgacacctatcctctct 13173954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 13346909 - 13347033
Alignment:
Q  58 gatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaa 157  Q
    |||||||| |||||||||||| ||||||||   ||||| || || || ||||||||| |||||||   | |||||  ||||||  | |||||||||||||    
T  13346909 gatgatattgttaacaccttgctgaaggagcggttgctgccaatttcacttgtgtctttggatatttctaatctctgtgaaatacaatcctttgatggaa 13347008  T
Q  158 atgggcttcgacacctctcctctct 182  Q
    |||| ||  ||||||| ||||||||    
T  13347009 atggactcggacacctatcctctct 13347033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 10892194 - 10892241
Alignment:
Q  135 tgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctct 182  Q
    ||||||||| | ||| | ||||||||||||||||||||||||||||||    
T  10892194 tgaaatgaaatgcttaggtggaaatgggcttcgacacctctcctctct 10892241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 11128192 - 11128163
Alignment:
Q  153 tggaaatgggcttcgacacctctcctctct 182  Q
    ||||||||||||||||||||||||||||||    
T  11128192 tggaaatgggcttcgacacctctcctctct 11128163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 11157183 - 11157154
Alignment:
Q  153 tggaaatgggcttcgacacctctcctctct 182  Q
    ||||||||||||||||||||||||||||||    
T  11157183 tggaaatgggcttcgacacctctcctctct 11157154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 54884 - 54744
Alignment:
Q  46 attgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagt 145  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||   ||||  |||||||  |||||||||||    
T  54884 attgtaaagggtgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgcatctacgtatctgtgatctctctgaaatgaagt 54785  T
Q  146 cctttgatggaaatgggcttcgacacctctcctctctccaa 186  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  54784 cctttgatggaaatgggctgcgacacctctcctctctccaa 54744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 26909682 - 26909820
Alignment:
Q  53 agggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttga 152  Q
    ||||| |||||| | |||||||||||||||||||||  |||||||||||||||||||| |||||  | ||||  |||||| |||||||||||||||||||    
T  26909682 agggtcatgatacatttaacaccttgatgaaggagttgttgctacccatctcccttgtttctctacaaatcatggatctctatgaaatgaagtcctttga 26909781  T
Q  153 tggaaatgggcttcgacacctctcctctctccaacatct 191  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  26909782 tggaaatgggcttcgacgcctctcctctctccaaaatct 26909820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 11487824 - 11487953
Alignment:
Q  54 gggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgat 153  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||  |||| ||  || | |  |||||||| ||| ||||    
T  11487824 gggtgatgatatacttaacaccttgatgaagcagtcgttgctacccatctcccttgtgtctctgactatcgattgtcgctacaaaatgaagccctatgat 11487923  T
Q  154 ggaaatgggcttcgacacctctcctctctc 183  Q
    |||| |||||||||| ||||||||||||||    
T  11487924 ggaagtgggcttcgatacctctcctctctc 11487953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 44954896 - 44954795
Alignment:
Q  92 tgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaaatgggcttcgacacct-ctcctctctccaacatc 190  Q
    ||||||||||||||||||||||||||  ||||| | ||||  ||||||||||||||||| | ||||||||||||| |||||| |||||||||| || |||    
T  44954896 tgctacccatctcccttgtgtctctgactatcagttatctggatgaaatgaagtcctttcaaggaaatgggcttcaacacctactcctctctcgaaaatc 44954797  T
Q  191 tc 192  Q
    ||    
T  44954796 tc 44954795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 17850200 - 17850069
Alignment:
Q  51 aaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtccttt 150  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||| || || ||||| |||||||||  ||||  | ||||| || |  |||| ||||||    
T  17850200 aaaggatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctataatctgaactccttt 17850101  T
Q  151 gatggaaatgggcttcgacacctctcctctct 182  Q
    ||||||||||| |||||||| || ||||||||    
T  17850100 gatggaaatggacttcgacatctttcctctct 17850069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 143206 - 143082
Alignment:
Q  58 gatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaa 157  Q
    |||||||| |||||||||||| ||||||||   ||||| || || || ||||||||| || ||||   | |||||  |||||| || |||||||||||||    
T  143206 gatgatattgttaacaccttgctgaaggagcggttgctgccaatttcacttgtgtctttgtatatttctaatctctgtgaaataaaatcctttgatggaa 143107  T
Q  158 atgggcttcgacacctctcctctct 182  Q
    |||| || |||||||| ||||||||    
T  143106 atggactccgacacctatcctctct 143082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 133158 - 133034
Alignment:
Q  58 gatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctggatatcaatgatctcaatgaaatgaagtcctttgatggaa 157  Q
    |||||||| |||||||||||| ||||||||   ||||| || || || ||||||||| || ||||   | |||||  |||||| || ||| |||||||||    
T  133158 gatgatattgttaacaccttgctgaaggagcggttgctgccaatttcacttgtgtctttgtatatttctaatctctgtgaaataaaatccattgatggaa 133059  T
Q  158 atgggcttcgacacctctcctctct 182  Q
    |||| || |||||||| ||||||||    
T  133058 atggactccgacacctatcctctct 133034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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