View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10504_1 (Length: 733)

Name: NF10504_1
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10504_1
NF10504_1
[»] chr8 (2 HSPs)
chr8 (344-726)||(34409141-34409523)
chr8 (30-214)||(34408830-34409014)
[»] chr2 (2 HSPs)
chr2 (403-489)||(43853134-43853220)
chr2 (78-166)||(43851749-43851837)
[»] chr6 (2 HSPs)
chr6 (403-530)||(7979381-7979508)
chr6 (114-166)||(7980045-7980097)
[»] chr7 (1 HSPs)
chr7 (403-548)||(14198760-14198905)
[»] chr3 (2 HSPs)
chr3 (78-214)||(38827917-38828053)
chr3 (423-498)||(38827385-38827460)
[»] chr4 (1 HSPs)
chr4 (415-488)||(42986374-42986447)


Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 344 - 726
Target Start/End: Original strand, 34409141 - 34409523
Alignment:
Q  344 ttttgcttttattggactatatgaaaaataggggtccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttga 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409141 ttttgcttttattggactatatgaaaaataggggtccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttga 34409240  T
Q  444 aatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409241 aatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaa 34409340  T
Q  544 caactactcgttgaggttggtacatgtattgcttatatggttactggaggcaaatcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaa 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409341 caactactcgttgaggttggtacatgtattgcttatatggttactggaggcaaatcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaa 34409440  T
Q  644 ttagaacttcctattggattgttatctttgcatctgtaaactttgttctctgtcagtgccccagcttcaactctatttctgct 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409441 ttagaacttcctattggattgttatctttgcatctgtaaactttgttctctgtcagtgccccagcttcaactctatttctgct 34409523  T

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Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 34408830 - 34409014
Alignment:
Q  30 atattgattggaaacatgtcgtcgtcagatgatattgcagcaaggcagaaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggt 129  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34408830 atattgatcggaaacatgtcatcgtcagatgatgttgcagcaaggcagaaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggt 34408929  T
Q  130 ggtactctgcttttcacaatatcacggccatggttggcgccggcgttctcacccttccttacgccatgtctaagatgggatggta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34408930 ggtactctgcttttcacaatatcacggccatggttggcgccggcgttctcacccttccttacgccatgtctaagatgggatggta 34409014  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 43853134 - 43853220
Alignment:
Q  403 tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgag 489  Q
    ||||||||||||||  | | |||||||||||||||||||||||||||||||||||| ||||||| | | ||||| ||||| ||||||    
T  43853134 tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgag 43853220  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 43851749 - 43851837
Alignment:
Q  78 aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg 166  Q
    ||||| || ||||||||||||||| | ||| | || ||||| || |||||||||||| | |||||||||||| | || |||||||||||    
T  43851749 aaggcaatagatgattggcttcccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttgg 43851837  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 403 - 530
Target Start/End: Complemental strand, 7979508 - 7979381
Alignment:
Q  403 tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg 502  Q
    |||||||| |||||||| | ||| || |||||||||||||| |||||||||||||| || |||| | | ||||| || || |||||  | ||||||||||    
T  7979508 tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatg 7979409  T
Q  503 cttttggaccaaaattgggtctatatat 530  Q
    |||||||   |||||| ||||| |||||    
T  7979408 cttttgggaaaaaattaggtctttatat 7979381  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 7980097 - 7980045
Alignment:
Q  114 aggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg 166  Q
    ||||| || |||||||||||||| |||||||||||| |||| |||||||||||    
T  7980097 aggaatgcaaaatggtggtactcagcttttcacaatgtcactgccatggttgg 7980045  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 548
Target Start/End: Complemental strand, 14198905 - 14198760
Alignment:
Q  403 tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg 502  Q
    |||||| | |||||||| | |||  |||||||||||||||| |||||||||||||| || || | | | || || || |||||||| || |||||| |||    
T  14198905 tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg 14198806  T
Q  503 cttttggaccaaaattgggtctatatatcattgttccacaacaact 548  Q
    |||||||   ||| |||||||| |||||  |||| |||||||||||    
T  14198805 cttttggtgaaaagttgggtctgtatattgttgtgccacaacaact 14198760  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 38828053 - 38827917
Alignment:
Q  78 aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttggcgccggcgttc 177  Q
    |||||||| |||||||||||||| || ||||| || || || |||||||||||||| || || || |||||| | || ||||||||||| || || ||||    
T  38828053 aaggccattgatgattggcttcctgtaactgcttctagaaatgccaaatggtggtattcggcgttccacaatctaacagccatggttggtgctggtgttc 38827954  T
Q  178 tcacccttccttacgccatgtctaagatgggatggta 214  Q
    |||  ||||| || || |||||  | |||||||||||    
T  38827953 tcagtcttccatatgcaatgtcccatatgggatggta 38827917  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 498
Target Start/End: Complemental strand, 38827460 - 38827385
Alignment:
Q  423 cactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaa 498  Q
    |||| |||||||||||||||| ||||||||||| || || ||||  ||||| || |||||||||||| | ||||||    
T  38827460 cactatatggcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaa 38827385  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 42986447 - 42986374
Alignment:
Q  415 acattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatga 488  Q
    ||||||| ||||  |||||||||| ||||||||||||||   ||  |||||| ||||||||||| |||||||||    
T  42986447 acattgtacactgcatggcaaatgattgaaatgcatgaatccgtatcaggaaaaagatttgacaagtatcatga 42986374  T

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