View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10504_12 (Length: 348)
Name: NF10504_12
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10504_12 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 37106476 - 37106645
Alignment:
| Q |
11 |
cacagaacacaaacagaaaacttcatgttcttttagaaaaaaccttaaaacctctctgnnnnnnnaggacnnnnnnnn-------ccaaagtgaggttta |
103 |
Q |
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| T |
37106476 |
cacagaacacaaacagaaaacttcatgttctttttgaaaaaaccttaaaacctctctgtttttt-aggacaaaaaaaaaaaagaaccaaagtgaggtttg |
37106574 |
T |
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| Q |
104 |
tgagaaacataacacaaaattcattcatacactaaatacaggaacaagtatttaacaatcaacagaacatc |
174 |
Q |
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| T |
37106575 |
tgagaaacataacacaaaattcattcatacactaaatacaggatcaagtatttaacaatcaacagaacatc |
37106645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 37106711 - 37106790
Alignment:
| Q |
240 |
ggtttttattacctgtaagaagatcctggtaaacaagcatggttgcagtcgttgttgttattgatgagagaacaaaaaag |
319 |
Q |
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| T |
37106711 |
ggtttttattacctgtaagaagatcctggtaaacaagcatggttgcagtcgttgttgttattgatgagagaacaaaaaag |
37106790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 37092805 - 37092852
Alignment:
| Q |
248 |
ttacctgtaagaagatcctggtaaacaagcatggttgcagtcgttgtt |
295 |
Q |
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| T |
37092805 |
ttacctgtaagaagatcctggtaaacaagcatggttgcggttgttgtt |
37092852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 37086106 - 37086145
Alignment:
| Q |
248 |
ttacctgtaagaagatcctggtaaacaagcatggttgcag |
287 |
Q |
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| T |
37086106 |
ttaccggtaagaagatcctggtaaacaagcatggttgcag |
37086145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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