View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10504_13 (Length: 346)
Name: NF10504_13
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10504_13 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 343
Target Start/End: Complemental strand, 3425001 - 3424683
Alignment:
| Q |
26 |
ttttgttaattagtttgtcaatcgaacgtgtcttctgctagtcaatttgatcactaaaattac----ataagacacatttaggaaacaaaataagtgttt |
121 |
Q |
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| T |
3425001 |
ttttgttaattagtttgtcaattgaatgtgtcttccgctagtcaatttgatcactaaaattactaacataagacacatttaggaaacaaaataagtgttt |
3424902 |
T |
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| Q |
122 |
accctttgatttcatgctatggggttggatagctccacttatttgagtcaaggttaaggagtttgaggtcctggttcaaactcaaacaagggagtatatt |
221 |
Q |
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| T |
3424901 |
accctttgatttcatgctatggggttggatagctccacttatttgagtcaaggttaaggagtgtgaggtcctggttcaaactcaaacaaaggagtatatt |
3424802 |
T |
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| Q |
222 |
atattaatttaacaactaaaatatagtaatctacaaaacactagcacaatacgaacactagtagtatttgnnnnnnnntgatataattaaatgtaatcac |
321 |
Q |
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| T |
3424801 |
atattaatttaacaactaaa--atagtaatctacaaaacactagcacaatacgaacactagtagtatttg-aaaaaaatgatataattaaatgtaatcac |
3424705 |
T |
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| Q |
322 |
atgtgtcgatattcttggacat |
343 |
Q |
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| T |
3424704 |
atgtgtcgatcttgttggacat |
3424683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 38487836 - 38487776
Alignment:
| Q |
142 |
ggggttggatagctccacttatttgagtcaagg-ttaaggagtttgaggtcctggttcaaa |
201 |
Q |
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| T |
38487836 |
ggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctggttcaaa |
38487776 |
T |
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