View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10504_14 (Length: 328)
Name: NF10504_14
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10504_14 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 31658742 - 31659044
Alignment:
| Q |
2 |
gatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatg |
101 |
Q |
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| T |
31658742 |
gatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatg |
31658841 |
T |
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| Q |
102 |
gtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttat |
201 |
Q |
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| T |
31658842 |
gtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttat |
31658941 |
T |
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| Q |
202 |
atctgaatgcaaataacttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttca |
301 |
Q |
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| T |
31658942 |
atctgaatgcaaataacttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttcaacatgtttgattgcttca |
31659041 |
T |
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| Q |
302 |
cag |
304 |
Q |
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||| |
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| T |
31659042 |
cag |
31659044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 136 - 303
Target Start/End: Complemental strand, 31657342 - 31657175
Alignment:
| Q |
136 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatgg |
235 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| | ||| |||||||||||| ||||| |||||||| || | |||||||||||||||||| |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgtgatgg |
31657243 |
T |
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| Q |
236 |
ccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttcaca |
303 |
Q |
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| T |
31657242 |
tcataatatgtagtccggtacaaaggagggttctcttgaattctttgaacatgtttgattgcttcaca |
31657175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 31650457 - 31650164
Alignment:
| Q |
19 |
tgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggtg---atggtggaaac |
115 |
Q |
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|||||||||||| ||||||| | ||| ||||| ||| ||||||||||| ||||| || ||||||||||||||| ||||||||||| ||||| |||| |
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| T |
31650457 |
tgagaacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaat |
31650358 |
T |
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| Q |
116 |
gagttttcttctttaattggaatgttgttatca---aaactgagtaatatagaagagtca---tttgatgacacaatggattccaaatttatatctgaat |
209 |
Q |
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| | ||||| |||| ||| ||||||||||| | ||||| |||||||| ||||||||| | | || | ||| ||||||||||||| ||||||| |
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| T |
31650357 |
ggatattcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtcaacatcataggagaaaattgattccaaatttaagtctgaat |
31650258 |
T |
|
| Q |
210 |
gcaaataacttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttcaca |
303 |
Q |
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| || | |||||||||||||||||||||||||||| ||||| ||||| | |||||||| ||| |||||||||||||||||||||||||||| |
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| T |
31650257 |
ggtaagagcttttgcaagtgtgatggccataatatgtagtccggtacaacgaagggttcttttgtattctttgaacatgtttgattgcttcaca |
31650164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 31628760 - 31628832
Alignment:
| Q |
219 |
ttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgttt |
291 |
Q |
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|||||||| | ||||||||||||||| || || || |||||||||| ||||||| ||||||| |||||||| |
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| T |
31628760 |
ttttgcaattatgatggccataatatatggttctgtataatggagggtcctcttgaattctttgcacatgttt |
31628832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
56 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
100 |
Q |
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||||||||||| || |||||| ||||||||||||||| ||||||| |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 31678631 - 31678547
Alignment:
| Q |
219 |
ttttgcaagtgtgatggccataatatgcagtcctatacaatggagggttctcttgagttctttgaacatgtttgattgcttcaca |
303 |
Q |
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|||||||| | ||||||||||||||| || || || |||||||||| ||||||| |||| || |||||||| || |||||||| |
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| T |
31678631 |
ttttgcaactatgatggccataatatatggttctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcaca |
31678547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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