View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10504_2 (Length: 644)
Name: NF10504_2
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10504_2 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 127 - 615
Target Start/End: Complemental strand, 29422423 - 29421936
Alignment:
| Q |
127 |
tataaagccgtggtttatagttttatactcaccgatgactttctgatggaaggaactcttgtctccagcaacagcctcacaagtaaaagagtttcatatc |
226 |
Q |
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| T |
29422423 |
tataaagccatggtttatagttttatactcaccgatgactttctgatggaaggaactcttgtctccagcaacaacctcacaagtaaaagagtttcatatc |
29422324 |
T |
|
| Q |
227 |
cagtttccaccaccggccgcacctgacatgaaaaaacttaagttcaacttcaaataaattaagtagtttcctgctagtgaattcaagattgtttcacctc |
326 |
Q |
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| T |
29422323 |
cagtttccaccaccggtcgcacctgacatgaaaaaacttaagttcaacttcaaataaattaagtagtttcctgctagtgaattcaagattgtttcacctc |
29422224 |
T |
|
| Q |
327 |
tagcagtgcttggctaccaacacagttaaactctaatttggagtagaaatgtagaataaccaaaaagtaataacaagacaagataaaataaaacaaaact |
426 |
Q |
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| T |
29422223 |
tagcagtgcttggctaccaacacagtt-ttctctaatttggagtagaaatgtacaataaccaaaaagtaataacaagacaagataaaataaaacaaaact |
29422125 |
T |
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| Q |
427 |
agccataattaaatttatttactttaatcatctgttcaacaatccaatcttctgtggctgaatccacactgtcaaacaagtctggccatctcaacttagc |
526 |
Q |
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| T |
29422124 |
agccataattatatttatttactttaatcatctgttcaacaatccaatcttctgtggatgaatccacactgccaaacaagtcaggccatctcaacttggc |
29422025 |
T |
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| Q |
527 |
agcctacaaatcatcaaacaacatactcacacttatttcaaaaccnnnnnnngtccaaaaccatatgaaactgaatgtgatcatcaaaa |
615 |
Q |
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| T |
29422024 |
agcctgcaaatcatcaaacaacatagtcacacttatttcaaaaccaaaaaaagtccaaaaccatatgaaactgaatgtgatcataaaaa |
29421936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 29422529 - 29422459
Alignment:
| Q |
21 |
catcatcatagatcacaaagttccttagaatctgatgataatgttgtgactttcacttgttaatccatgat |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29422529 |
catcatcatagatcacaaagttccttagaatctgatgataatgttgtgactttcacttgttaatccatgat |
29422459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 29416253 - 29416151
Alignment:
| Q |
156 |
caccgatgactttctgatggaaggaactcttgtctccagcaacagcctcacaagtaaaagagtttcatatccagtttccaccaccggccgcacctgacat |
255 |
Q |
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|||||| ||||| |||||||| || ||| ||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |
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| T |
29416253 |
caccgaagacttcctgatggacggggttctggtctctagcaacaatctcacaagtaaaaggttttcatatccagtttccactaccggtcgcacctgacat |
29416154 |
T |
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| Q |
256 |
gaa |
258 |
Q |
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||| |
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| T |
29416153 |
gaa |
29416151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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