View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10504_3 (Length: 571)

Name: NF10504_3
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10504_3
NF10504_3
[»] chr4 (4 HSPs)
chr4 (11-315)||(27538387-27538683)
chr4 (408-550)||(27538771-27538913)
chr4 (411-510)||(43398701-43398799)
chr4 (411-480)||(43814419-43814487)
[»] chr8 (2 HSPs)
chr8 (120-286)||(34541097-34541263)
chr8 (121-235)||(3641055-3641169)
[»] chr7 (1 HSPs)
chr7 (117-247)||(20276633-20276763)
[»] chr5 (2 HSPs)
chr5 (411-510)||(29304381-29304479)
chr5 (408-456)||(12379745-12379793)
[»] chr3 (1 HSPs)
chr3 (411-510)||(25343473-25343571)
[»] chr6 (1 HSPs)
chr6 (411-510)||(2090248-2090346)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 27538387 - 27538683
Alignment:
Q  11 cagagaagtttatataatcattgcaactttccaagtttatattttggaaagtatattataaggactcaatattactccaacccaacacatgtcgaaaaat 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |    ||||||    
T  27538387 cagagaagcttatataatcattgcaactttccaagtttatattttggaaagtatattataaggactcaata---ctccaacccaacacctac--aaaaat 27538481  T
Q  111 atcactaaaggaaaatgctaaaagccacaacaaaaaattttgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttg 210  Q
    |   ||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27538482 a---ctaaaggaaaatgctaaaagctacaccaaaaaatttcgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttg 27538578  T
Q  211 gcatttggcacatgatcttataatgagttaagtttaaaacatggatttggagcatctttatgtgttctgattctttctataggtgcaacattgacaatga 310  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27538579 gcatttggcacttgatcttataatgagttaagtttaaaacatggatttggagcatctttatgtgttctgattctttctatcggtgcaacattgacaatga 27538678  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 408 - 550
Target Start/End: Original strand, 27538771 - 27538913
Alignment:
Q  408 aaaccataagccaacaagaagaatgtcattaaccaagcaaattgtgtgtttaggagtatgtcgtgcatgagtccggcaacaaatctctcgtaccatatag 507  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| |    
T  27538771 aaaccataagccaacaagaagaatgtcattaacgaagcaaattgtgtgtttaagagtatgtcgtgcatgagtcgtgcaacaaatctctcgtaccatatgg 27538870  T
Q  508 caagactcaccactaaatgagcctcgggtgtacatataactta 550  Q
    ||||||||||| ||||||| |||||||||||||||||||||||    
T  27538871 caagactcaccgctaaatgggcctcgggtgtacatataactta 27538913  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 411 - 510
Target Start/End: Original strand, 43398701 - 43398799
Alignment:
Q  411 ccataagccaacaagaagaatgtcattaaccaagcaaattgtgtgtttaggagtatgtcgtgcatgagtccggcaacaaatctctcgtaccatatagcaa 510  Q
    |||||| ||||| ||||||| |||||| ||||| |||| ||||||||| | || ||||||||||||||||  |||  |||||||||||||||||||||||    
T  43398701 ccataaaccaactagaagaaggtcattcaccaaacaaagtgtgtgttttg-agcatgtcgtgcatgagtcgcgcattaaatctctcgtaccatatagcaa 43398799  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 480
Target Start/End: Complemental strand, 43814487 - 43814419
Alignment:
Q  411 ccataagccaacaagaagaatgtcattaaccaagcaaattgtgtgtttaggagtatgtcgtgcatgagtc 480  Q
    |||||| ||||| ||||||| |||||| ||||| |||| ||||||||| | || ||||||||||||||||    
T  43814487 ccataaaccaactagaagaaggtcattcaccaaacaaaatgtgtgttttg-agcatgtcgtgcatgagtc 43814419  T

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Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 120 - 286
Target Start/End: Complemental strand, 34541263 - 34541097
Alignment:
Q  120 ggaaaatgctaaaagccacaacaaaaaattttgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttggcatttggc 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  34541263 ggaaaatgctaaaagccacgacaaaaaattttgttgaaattgcacgaaccatttttccttataattaatcttgttagagagtatttctttggcatttggc 34541164  T
Q  220 acatgatcttataatgagttaagtttaaaacatggatttggagcatctttatgtgttctgattcttt 286  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  34541163 acttgatcttataatgagttaagtttaaaacatgaatttggagcatctttatgtgttatgattcttt 34541097  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 3641169 - 3641055
Alignment:
Q  121 gaaaatgctaaaagccacaacaaaaaattttgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttggcatttggca 220  Q
    |||||||| ||||| ||  |||||||||||   ||||||||||||| |||||| || ||||||||||||||||||||  ||| | |||||||||||||||    
T  3641169 gaaaatgccaaaagacatgacaaaaaatttctctgaaattgcacgaaccattcctctttgtaattaatcttgttagacggtaatgctttggcatttggca 3641070  T
Q  221 catgatcttataatg 235  Q
    | |||||||||||||    
T  3641069 cttgatcttataatg 3641055  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 20276633 - 20276763
Alignment:
Q  117 aaaggaaaatgctaaaagccacaacaaaaaattttgttgaaattgcacgatccattcttccttgtaattaatcttgttagagagtatttctttggcattt 216  Q
    ||||||||| |||||||| ||| || ||| | || ||||||||||||||| |||||| || |||||||||| ||||||||| ||   | |||||||||||    
T  20276633 aaaggaaaacgctaaaaggcacgacgaaagaattcgttgaaattgcacgaaccattcctctttgtaattaaccttgttagacagctatgctttggcattt 20276732  T
Q  217 ggcacatgatcttataatgagttaagtttaa 247  Q
    ||||| |||| |||||  |||||| ||||||    
T  20276733 ggcacttgattttatagggagttacgtttaa 20276763  T

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Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 411 - 510
Target Start/End: Complemental strand, 29304479 - 29304381
Alignment:
Q  411 ccataagccaacaagaagaatgtcattaaccaagcaaattgtgtgtttaggagtatgtcgtgcatgagtccggcaacaaatctctcgtaccatatagcaa 510  Q
    |||||| ||||| ||||||| |||||| ||||| |||| ||||||||| | || ||||||||||||||||  |||  |||||||||||||||||||||||    
T  29304479 ccataaaccaactagaagaaggtcattcaccaaacaaagtgtgtgttttg-agcatgtcgtgcatgagtcgtgcattaaatctctcgtaccatatagcaa 29304381  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 12379745 - 12379793
Alignment:
Q  408 aaaccataagccaacaagaagaatgtcattaaccaagcaaattgtgtgt 456  Q
    ||||||||| ||||||||||||| |||||| |||| ||||| |||||||    
T  12379745 aaaccataaaccaacaagaagaaggtcattcaccatgcaaagtgtgtgt 12379793  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 510
Target Start/End: Original strand, 25343473 - 25343571
Alignment:
Q  411 ccataagccaacaagaagaatgtcattaaccaagcaaattgtgtgtttaggagtatgtcgtgcatgagtccggcaacaaatctctcgtaccatatagcaa 510  Q
    |||||| ||||| ||||||| |||||| ||||| |||| ||||||||| | || |||||||||||||| |  |||  |||||||||||||||||||||||    
T  25343473 ccataaaccaactagaagaaggtcattcaccaaacaaagtgtgtgttttg-agcatgtcgtgcatgagccgtgcattaaatctctcgtaccatatagcaa 25343571  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 510
Target Start/End: Complemental strand, 2090346 - 2090248
Alignment:
Q  411 ccataagccaacaagaagaatgtcattaaccaagcaaattgtgtgtttaggagtatgtcgtgcatgagtccggcaacaaatctctcgtaccatatagcaa 510  Q
    |||||| ||||| ||||||  |||||| ||||| |||| ||||||||| | || ||||||| ||||||||  |||  |||||||||||||||||||||||    
T  2090346 ccataaaccaactagaagagggtcattcaccaaacaaagtgtgtgttttg-agcatgtcgtacatgagtcgtgcattaaatctctcgtaccatatagcaa 2090248  T

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