View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10504_4 (Length: 556)

Name: NF10504_4
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10504_4
NF10504_4
[»] chr2 (7 HSPs)
chr2 (4-416)||(8328314-8328733)
chr2 (447-539)||(8328847-8328939)
chr2 (139-215)||(6493517-6493593)
chr2 (126-215)||(33994606-33994696)
chr2 (142-215)||(9596925-9596998)
chr2 (142-214)||(18229432-18229504)
chr2 (142-215)||(21281552-21281624)
[»] chr8 (5 HSPs)
chr8 (132-215)||(31544655-31544738)
chr8 (139-216)||(31559516-31559593)
chr8 (140-214)||(31547810-31547884)
chr8 (140-224)||(31556502-31556586)
chr8 (142-214)||(31877211-31877283)
[»] chr5 (3 HSPs)
chr5 (139-229)||(32361825-32361915)
chr5 (139-214)||(32379056-32379131)
chr5 (141-214)||(40640266-40640339)
[»] chr1 (2 HSPs)
chr1 (141-222)||(38624993-38625074)
chr1 (140-214)||(46613936-46614010)
[»] chr4 (3 HSPs)
chr4 (139-215)||(55290063-55290139)
chr4 (139-214)||(38507765-38507840)
chr4 (142-214)||(30161977-30162049)
[»] chr7 (2 HSPs)
chr7 (139-214)||(30034434-30034509)
chr7 (141-215)||(45868101-45868175)
[»] chr3 (2 HSPs)
chr3 (142-216)||(32053543-32053617)
chr3 (142-211)||(50683112-50683181)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 416
Target Start/End: Original strand, 8328314 - 8328733
Alignment:
Q  4 tgaacgagcagaacctgtgatgcttattgctaaatacaaccctaagttctgccctaattaattctgcttgtgtgctcggcttgannnnnnnactagtgac 103  Q
    |||||||| | | ||| ||||||||||||| || |||||||||||| ||||||||||| ||||||  ||||||||| |||||||       ||||| |||    
T  8328314 tgaacgaggatagcctatgatgcttattgccaagtacaaccctaagctctgccctaatgaattctatttgtgtgctgggcttgatttttttactagagac 8328413  T
Q  104 tttaatgagaaaacgagaa--catagaaagaaaaaagaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaact 201  Q
    |||||||| |||||| |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328414 tttaatgaaaaaacgtgaaagcatagaaagaaaaaaaaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaact 8328513  T
Q  202 gagctatccccgcatgttgattagttttactattttac-attgttattcataaattactcc-nnnnnnntacaccatgctggtacctttttggtgaaaaa 299  Q
    |||||||||||||||||||||| ||||||||||||| | ||| ||||| ||||||||| ||        |||||||||||||||| ||||||||||||||    
T  8328514 gagctatccccgcatgttgatttgttttactattttcctattattattaataaattaccccaaaaaaaatacaccatgctggtacttttttggtgaaaaa 8328613  T
Q  300 tattaaccaagtgatttttccgataaatacatgtaaacttattttattaatgtgtcgtgttaaatagatgaattcaaattgaata---ttctttttaccg 396  Q
    || ||| |||||||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  8328614 taataagcaagtgatttttccgataaatacatgtaatttttttttaataatgtgtcgtgttaaatagatgaattcaaattgaatattcttctttttaccg 8328713  T
Q  397 tcaaacacagcaaaagttgt 416  Q
    ||||||||||||||||||||    
T  8328714 tcaaacacagcaaaagttgt 8328733  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 447 - 539
Target Start/End: Original strand, 8328847 - 8328939
Alignment:
Q  447 ctcaagcctaatttactggtggattagtactgaggaaaaccattttttcaaatacatgacaagtactataaaatgtctcataagactttttct 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328847 ctcaagcctaatttactggtggattagtactgaggaaaaccattttttcaaatacatgacaagtactataaaatgtctcataagactttttct 8328939  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 6493593 - 6493517
Alignment:
Q  139 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493593 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 6493517  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 33994606 - 33994696
Alignment:
Q  126 agaaagaaaaaagaaat-gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 215  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994606 agaaaaaaaaatgaaattgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 33994696  T

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Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 9596998 - 9596925
Alignment:
Q  142 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596998 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 9596925  T

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Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 18229504 - 18229432
Alignment:
Q  142 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229504 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 18229432  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 21281552 - 21281624
Alignment:
Q  142 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 215  Q
    |||||||||| |||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  21281552 tgcggtgagcatggatcaaacacgcgaccttcggatcttca-tctgaggctctcccaactgagctatccccgca 21281624  T

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Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 31544738 - 31544655
Alignment:
Q  132 aaaaaagaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544738 aaaaaaaaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 31544655  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 31559593 - 31559516
Alignment:
Q  139 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559593 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcat 31559516  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 31547884 - 31547810
Alignment:
Q  140 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31547884 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31547810  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 31556586 - 31556502
Alignment:
Q  140 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcatgttgatta 224  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  31556586 aatgcggtgagcgtggatcaaacacgcgaccttcagatcttcaatctgacgctctcccaactgagctatccccgcatgatgatta 31556502  T

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Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 31877211 - 31877283
Alignment:
Q  142 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31877211 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31877283  T

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Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 32361825 - 32361915
Alignment:
Q  139 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcatgttgattagtttt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  32361825 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctatttgattagtttt 32361915  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 32379056 - 32379131
Alignment:
Q  139 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379056 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 32379131  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 40640266 - 40640339
Alignment:
Q  141 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640266 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 40640339  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 38624993 - 38625074
Alignment:
Q  141 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcatgttgat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38624993 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgttgat 38625074  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 46614010 - 46613936
Alignment:
Q  140 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46614010 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 46613936  T

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Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 55290063 - 55290139
Alignment:
Q  139 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290063 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 55290139  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 38507765 - 38507840
Alignment:
Q  139 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507765 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 38507840  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 30162049 - 30161977
Alignment:
Q  142 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30162049 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 30161977  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 30034434 - 30034509
Alignment:
Q  139 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034434 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 30034509  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 45868101 - 45868175
Alignment:
Q  141 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868101 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgca 45868175  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 32053543 - 32053617
Alignment:
Q  142 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053543 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcat 32053617  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 50683112 - 50683181
Alignment:
Q  142 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50683112 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccc 50683181  T

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