View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10504_5 (Length: 546)
Name: NF10504_5
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10504_5 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 6e-91; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 33854179 - 33854352
Alignment:
| Q |
180 |
tacaaatatacttattttacttagccgaacgtaccattattgtatcaatagttaatttttaagagtgagtagggaccattgttaattgacatcaatccta |
279 |
Q |
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| T |
33854179 |
tacaaatatacttattttacttagccgaacgtaccattattgtatcaatagttaatttttaagagtgagtagggaccattgttaattgacatcaatccta |
33854278 |
T |
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| Q |
280 |
ctttttagagcctctctgagtggagtgtgaagtagagaaaacttttgttttcacctagctagctcataattttt |
353 |
Q |
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| T |
33854279 |
ctttttagagtctctctgagtggagtgtgaagtagagaaaacttttgttttcacctagctagctcataattttt |
33854352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 33854051 - 33854180
Alignment:
| Q |
1 |
tttctatgtctaaaaagttgtaataattaaattgtatcatatgactgctaaatctaatatactacttaatatctgtggtatgtaatctactcttatatta |
100 |
Q |
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| T |
33854051 |
tttctatgtctaaaaagttgtaataa----attgtatcatatgactgctaaatctaatatactacttaatatctgtggtatgtaatctactcttatatta |
33854146 |
T |
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| Q |
101 |
agggaa-gtgggagtattctttatcaattagata |
133 |
Q |
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| T |
33854147 |
agggaaggtgggagtattctttatcaattagata |
33854180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 328 - 520
Target Start/End: Original strand, 33865453 - 33865638
Alignment:
| Q |
328 |
tttcacctagctagctcataatttttcattt-aaaaaatgaaaggtttgagttgtttcaagataaacatgattttagtaatattgtttgtgcttgttcac |
426 |
Q |
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| T |
33865453 |
tttcatctagctagcaaataatttttcatttgaaaaaatgaaaggttctagtttttccaagataaacatgatatttgtaatattat----gcttcttcac |
33865548 |
T |
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| Q |
427 |
aaacttgaggatgggtttgggtgatatgaatggaatcggagagcagtcactttcaaagattgcctgccattcacaaaaccattctttctctcca |
520 |
Q |
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| T |
33865549 |
aaacttgaggatctgtttgggtgatatgaatggaattggagagcagccactttcaaagat----tgccattcacaaaaccattcttgctctcca |
33865638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 335 - 520
Target Start/End: Original strand, 33855101 - 33855279
Alignment:
| Q |
335 |
tagctagctcataatttttcattt-aaaaaatgaaaggtttgagttgtttcaagataaacatgattttagtaatattgtttgtgcttgttcacaaacttg |
433 |
Q |
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| T |
33855101 |
tagctagcaaataatttttcatttgaaaaaatgaaaggttctagtttttccaagataaacatgatatttgtaatattat----gcttcttcacaaacttg |
33855196 |
T |
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| Q |
434 |
aggatgggtttgggtgatatgaatggaatcggagagcagtcactttcaaagattgcctgccattcacaaaaccattctttctctcca |
520 |
Q |
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| T |
33855197 |
aggatctgtttgggtgatatgaatggaattggagagcagccactttcaaagat----tgccattcacaaaaccattcttgctctcca |
33855279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 33854896 - 33854930
Alignment:
| Q |
219 |
ttgtatcaatagttaatttttaagagtgagtaggg |
253 |
Q |
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| T |
33854896 |
ttgtaccaatagttaatttttaagagtgagtaggg |
33854930 |
T |
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