View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10504_7 (Length: 416)
Name: NF10504_7
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10504_7 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 1672492 - 1672089
Alignment:
| Q |
13 |
aatatcgatatcatttgtggaaatataaccattactatcatgcgggcccaatgtgatgttatcttatctagagtatcaagatgaatggatgaagacattc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1672492 |
aatatcgatatcatttgtggaaatataaccattattatcatgcgggcccaatgtcatgttatcttatctagagtatcaagatgaatggatgaagacattc |
1672393 |
T |
|
| Q |
113 |
ccaccaatgttgtttgttacatgacatcctcttttacaaaacaaaacataaacctcaaactttgttcaacaaaaccttatctatctatctatgtctatgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1672392 |
ccaccaatgttgtttgttacatgacatcctcttttacaaaacaaaacataaacctcaaactttgttcaacaaaaccttatctatctatctatgtctatgt |
1672293 |
T |
|
| Q |
213 |
tctaacatcttacacttccaccgtctctttctctctaccttcaatggcatcatccatcattcctcgtcactattgctccaactttgcaactacacccatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1672292 |
tctaacatcttacacttccaccgtctctttctctctaccttcaatggcatcatccatcattcctcgtcactattgctccaactttgcaactacacccatt |
1672193 |
T |
|
| Q |
313 |
ttgtttcactctaataatcactctaagagtcttaattatccatttttcaataccaatgttggaggatttagtagaagtttcactactcgttgctcttacc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1672192 |
ttgtttcactctaataatcactctaagagtcttaattatccatttttgaataccaatgttggaggatttagtagaagtttcactactcgttgctcttatc |
1672093 |
T |
|
| Q |
413 |
aaac |
416 |
Q |
| |
|
|||| |
|
|
| T |
1672092 |
aaac |
1672089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University