View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10504_8 (Length: 412)
Name: NF10504_8
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10504_8 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 43231609 - 43231970
Alignment:
| Q |
1 |
cgaatttattaagatgtcaatgtaaaggatgaagagttaagcatgggaatcaagtaaatacatgcatcaacccaagaggtaatggatttggtcaaggaaa |
100 |
Q |
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| T |
43231609 |
cgaatttattaagatgtcaatgtaaaggatgaagagttaagcgtgggaatcaagtaaatatatg---------aggaggtaatggatttggtcaagga-- |
43231697 |
T |
|
| Q |
101 |
aagaaaaaggagaggaggagaataaagtgtggcaacagtgctataattagcnnnnnnnngttctattctagtggaaattatcaggttgacgaaccagtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43231698 |
-----------gaggaggagaataaagtgtggcaacagtgctataattagcaaaaaaaagttctattctagtggaaattatcaggttgacgagccagtaa |
43231786 |
T |
|
| Q |
201 |
gatccatttgttgggcattaatgaaataacttttggttttatttatcatttcccaagtgtgtatatcttgaaaggtgctcaatgccgtttcaaataattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43231787 |
gatccatttgttgggcattaatgaaataacttttggttttatttatcatttcccaagtgtgtatagcttgaaaggtgctcaatgccgtttcaaataattt |
43231886 |
T |
|
| Q |
301 |
gaatgttttgaatgatgtcgacaaacaattggaaaggaaactgctctatgcgccttttaattactcacaactctccaaaatgcc |
384 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
43231887 |
gaatgtttcgaatgatgtcgacaaacaattggaaaggaaactgctctatgcgccttttaatcactcacaactctccagaatgcc |
43231970 |
T |
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