View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10504_low_1 (Length: 310)

Name: NF10504_low_1
Description: NF10504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10504_low_1
NF10504_low_1
[»] chr6 (20 HSPs)
chr6 (22-172)||(18717463-18717613)
chr6 (193-310)||(27822137-27822255)
chr6 (193-306)||(11658884-11658997)
chr6 (202-310)||(8048985-8049092)
chr6 (195-263)||(12882077-12882145)
chr6 (197-310)||(33615523-33615636)
chr6 (195-309)||(1127209-1127323)
chr6 (195-269)||(32361323-32361397)
chr6 (241-306)||(3536034-3536099)
chr6 (245-306)||(30049920-30049981)
chr6 (241-306)||(3542245-3542310)
chr6 (241-295)||(29340841-29340895)
chr6 (245-295)||(30052207-30052257)
chr6 (197-277)||(22873769-22873850)
chr6 (231-310)||(14238426-14238506)
chr6 (193-251)||(18727924-18727981)
chr6 (214-275)||(12778454-12778515)
chr6 (215-284)||(24443117-24443186)
chr6 (195-263)||(22910756-22910824)
chr6 (195-251)||(34373865-34373920)
[»] chr1 (23 HSPs)
chr1 (22-195)||(48447645-48447818)
chr1 (193-278)||(31915502-31915587)
chr1 (197-284)||(10927151-10927235)
chr1 (195-310)||(10928244-10928359)
chr1 (195-310)||(12944071-12944186)
chr1 (195-277)||(50713668-50713749)
chr1 (195-278)||(28660798-28660881)
chr1 (193-278)||(33152771-33152857)
chr1 (195-283)||(8967851-8967938)
chr1 (244-303)||(13444015-13444074)
chr1 (215-277)||(8221462-8221524)
chr1 (193-284)||(23987525-23987619)
chr1 (195-284)||(28659613-28659701)
chr1 (195-310)||(9030971-9031087)
chr1 (195-310)||(10925695-10925807)
chr1 (197-310)||(239644-239757)
chr1 (195-260)||(9199285-9199349)
chr1 (195-310)||(40058121-40058238)
chr1 (195-308)||(43681414-43681530)
chr1 (241-306)||(50857468-50857533)
chr1 (215-259)||(21903726-21903770)
chr1 (223-278)||(31913359-31913414)
chr1 (241-306)||(8931220-8931285)
[»] chr2 (24 HSPs)
chr2 (193-283)||(12966429-12966519)
chr2 (195-275)||(4184883-4184963)
chr2 (195-310)||(33051573-33051688)
chr2 (195-310)||(23457601-23457716)
chr2 (195-278)||(32162021-32162104)
chr2 (224-310)||(15129373-15129459)
chr2 (197-277)||(5171638-5171717)
chr2 (214-277)||(1518166-1518229)
chr2 (241-306)||(22011436-22011501)
chr2 (193-310)||(36647245-36647362)
chr2 (193-295)||(36615161-36615265)
chr2 (193-275)||(36648918-36649001)
chr2 (241-306)||(27952342-27952407)
chr2 (194-262)||(25458193-25458261)
chr2 (195-310)||(28737792-28737907)
chr2 (215-283)||(21772349-21772417)
chr2 (214-285)||(12123941-12124012)
chr2 (244-306)||(2155970-2156032)
chr2 (195-261)||(32163840-32163906)
chr2 (241-306)||(27956178-27956243)
chr2 (241-306)||(31636337-31636402)
chr2 (241-306)||(33655628-33655693)
chr2 (195-255)||(19582065-19582124)
chr2 (244-295)||(31634107-31634158)
[»] chr3 (11 HSPs)
chr3 (193-310)||(2472708-2472825)
chr3 (241-306)||(43303984-43304049)
chr3 (241-295)||(5128909-5128963)
chr3 (241-306)||(43306696-43306761)
chr3 (202-269)||(8536434-8536500)
chr3 (224-310)||(365612-365698)
chr3 (209-278)||(45168371-45168443)
chr3 (195-255)||(1320124-1320183)
chr3 (195-262)||(2107922-2107987)
chr3 (241-295)||(3063772-3063826)
chr3 (241-306)||(3068899-3068964)
[»] chr5 (9 HSPs)
chr5 (195-310)||(22440812-22440927)
chr5 (195-285)||(19497349-19497439)
chr5 (197-278)||(492523-492604)
chr5 (195-280)||(18252371-18252455)
chr5 (241-306)||(21848989-21849054)
chr5 (193-278)||(26140296-26140380)
chr5 (241-295)||(40778821-40778875)
chr5 (193-306)||(8456402-8456517)
chr5 (234-262)||(9868473-9868501)
[»] chr7 (30 HSPs)
chr7 (193-294)||(4888721-4888822)
chr7 (197-278)||(24840100-24840180)
chr7 (195-310)||(11000845-11000960)
chr7 (195-310)||(1365626-1365741)
chr7 (193-279)||(3778759-3778850)
chr7 (193-282)||(30217766-30217856)
chr7 (195-310)||(1369760-1369875)
chr7 (195-284)||(11228936-11229024)
chr7 (197-278)||(27142623-27142703)
chr7 (195-310)||(5934559-5934674)
chr7 (197-275)||(2767887-2767964)
chr7 (241-306)||(859180-859245)
chr7 (241-306)||(1217184-1217249)
chr7 (195-284)||(8916423-8916511)
chr7 (241-306)||(13882710-13882775)
chr7 (193-307)||(11228673-11228788)
chr7 (197-284)||(1786640-1786726)
chr7 (195-278)||(6451802-6451884)
chr7 (229-307)||(13466719-13466798)
chr7 (244-306)||(13886183-13886245)
chr7 (197-308)||(1883450-1883557)
chr7 (197-263)||(1690198-1690263)
chr7 (195-278)||(1874495-1874575)
chr7 (215-268)||(4133336-4133389)
chr7 (240-306)||(27309638-27309705)
chr7 (241-295)||(1220475-1220529)
chr7 (195-269)||(35814826-35814899)
chr7 (233-278)||(1753650-1753695)
chr7 (195-267)||(4955927-4955998)
chr7 (230-278)||(7803083-7803131)
[»] chr4 (22 HSPs)
chr4 (195-303)||(10494858-10494966)
chr4 (195-277)||(40206103-40206185)
chr4 (195-278)||(13990729-13990811)
chr4 (215-310)||(22486795-22486889)
chr4 (224-310)||(24667640-24667726)
chr4 (202-278)||(38888042-38888117)
chr4 (195-284)||(7634035-7634123)
chr4 (195-284)||(21433609-21433697)
chr4 (195-310)||(13991398-13991513)
chr4 (196-278)||(15848361-15848441)
chr4 (241-306)||(6659354-6659419)
chr4 (202-251)||(50519224-50519272)
chr4 (215-308)||(7724098-7724189)
chr4 (202-278)||(9260535-9260610)
chr4 (195-263)||(18689588-18689655)
chr4 (193-269)||(19935439-19935515)
chr4 (240-310)||(54700616-54700687)
chr4 (215-268)||(17254945-17254998)
chr4 (239-283)||(7723709-7723753)
chr4 (253-285)||(52743729-52743761)
chr4 (195-263)||(18657109-18657176)
chr4 (195-283)||(53477261-53477348)
[»] chr8 (27 HSPs)
chr8 (218-306)||(18468626-18468714)
chr8 (215-284)||(2687716-2687785)
chr8 (195-283)||(26374855-26374942)
chr8 (241-309)||(42891685-42891753)
chr8 (195-278)||(20693754-20693836)
chr8 (243-310)||(42890394-42890461)
chr8 (195-277)||(14130120-14130201)
chr8 (195-277)||(24577581-24577662)
chr8 (193-310)||(2189741-2189857)
chr8 (195-284)||(24730987-24731075)
chr8 (202-310)||(24731189-24731297)
chr8 (193-295)||(2188375-2188479)
chr8 (195-278)||(2609547-2609629)
chr8 (241-295)||(22926683-22926737)
chr8 (197-255)||(24578852-24578909)
chr8 (241-306)||(22512070-22512135)
chr8 (241-306)||(22519370-22519435)
chr8 (241-306)||(22921874-22921939)
chr8 (241-306)||(23570584-23570649)
chr8 (195-278)||(16598203-16598286)
chr8 (215-278)||(2689121-2689183)
chr8 (195-258)||(16598121-16598183)
chr8 (241-306)||(6845336-6845401)
chr8 (241-306)||(37189866-37189931)
chr8 (215-286)||(25479448-25479520)
chr8 (195-243)||(26377986-26378033)
chr8 (241-306)||(22520823-22520888)
[»] scaffold0240 (4 HSPs)
scaffold0240 (197-278)||(1614-1695)
scaffold0240 (195-295)||(16002-16101)
scaffold0240 (197-253)||(14374-14430)
scaffold0240 (205-275)||(14810-14881)
[»] scaffold0251 (1 HSPs)
scaffold0251 (195-308)||(9657-9771)
[»] scaffold0330 (1 HSPs)
scaffold0330 (197-278)||(17596-17677)
[»] scaffold0024 (2 HSPs)
scaffold0024 (195-276)||(145688-145769)
scaffold0024 (195-276)||(143974-144051)
[»] scaffold0531 (1 HSPs)
scaffold0531 (246-310)||(11608-11672)
[»] scaffold0054 (3 HSPs)
scaffold0054 (202-281)||(49284-49362)
scaffold0054 (202-308)||(37674-37778)
scaffold0054 (195-263)||(10609-10677)
[»] scaffold0090 (1 HSPs)
scaffold0090 (195-277)||(15117-15198)
[»] scaffold0110 (1 HSPs)
scaffold0110 (209-305)||(46758-46855)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 18717613 - 18717463
Alignment:
Q  22 attagttcaacaggaaattcaacaagccctaacaactttacgactgagaagataggaattgaacaacgtgacatgtcagaggaaacaactcaggttggct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  18717613 attagttcaacaggaaattcaacaagccctaacaactttacgactaaggagataggaattgaacaacgtgacatgtctgaagaaacaactcaggttggct 18717514  T
Q  122 ctgaatgtttagacaaagaatagagtgtgcttggtactgtggtaactgatt 172  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18717513 ctgaatgtttagagaaagaatagagtgtgcttggtactgtggtaactgatt 18717463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 193 - 310
Target Start/End: Complemental strand, 27822255 - 27822137
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt-cttttttatatag 291  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||  |||||||| ||||| ||| |||    
T  27822255 aatcaataatattttagagagtttttctcaatttctggtggatttcggaaccctgttttcacaagtttgtcgcttgaaaacttgttccttttctatttag 27822156  T
Q  292 gtttggtgcttgctagcct 310  Q
    |||| | | ||||||||||    
T  27822155 gtttagcgtttgctagcct 27822137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 306
Target Start/End: Original strand, 11658884 - 11658997
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatatagg 292  Q
    |||||||| ||||||||||||||||||||||||| | |||||||||  ||| |||||||||||||||| || ||||| || ||||||||||  || ||||    
T  11658884 aatcaataatattttagagagtttttctcaatttttggtggattccaaaactctattttcacaagtttatcgcttgcaaatttgttcttttcaatctagg 11658983  T
Q  293 tttggtgcttgcta 306  Q
    ||| ||||||||||    
T  11658984 tttagtgcttgcta 11658997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 202 - 310
Target Start/End: Complemental strand, 8049092 - 8048985
Alignment:
Q  202 tattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgct 301  Q
    |||||||||||||||| |||||||||| |||||| ||||| || |||||||||||||||||||||||| ||||| |||||||| || |||| ||  ||||    
T  8049092 tattttagagagtttt-ctcaatttctggtggatcccggagccttattttcacaagtttgtcacttgcaaactttttctttttaatctaggattaatgct 8048994  T
Q  302 tgctagcct 310  Q
    |||||||||    
T  8048993 tgctagcct 8048985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 12882077 - 12882145
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtc 263  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  12882077 tcaataatattttagagagtttttctcaatttctggtggattccgaaaccctattttcacaagtttgtc 12882145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 310
Target Start/End: Complemental strand, 33615636 - 33615523
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt-tatataggttt 295  Q
    |||| ||||||||||||||||| ||||||| | ||| |||| | ||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||    
T  33615636 aataatattttagagagttttt-tcaatttatggtgaattctgaaaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttt 33615538  T
Q  296 ggtgcttgctagcct 310  Q
     | ||||| ||||||    
T  33615537 tgcgcttgttagcct 33615523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 1127209 - 1127323
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggt 293  Q
    ||||||||||||||||||||||| |||||||| | ||| |||||| ||| |||||||||||| |||||| ||||| |||||| |||||||| || |||||    
T  1127209 tcaatattattttagagagtttt-ctcaatttttggtgtattccgaaacactattttcacaaatttgtcgcttgcaaacttgtttctttttaatctaggt 1127307  T
Q  294 ttggtgcttgctagcc 309  Q
    || | ||| |||||||    
T  1127308 ttagcgctcgctagcc 1127323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 32361323 - 32361397
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgc 269  Q
    |||||| ||||||||||||||||||||||||||| || |||||||||||| |||||| |||| ||| || |||||    
T  32361323 tcaataatattttagagagtttttctcaatttctcgtagattccggaaccttatttttacaattttatcgcttgc 32361397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 3536034 - 3536099
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  3536034 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 3536099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 30049920 - 30049981
Alignment:
Q  245 ctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||||||||||| | ||||||||    
T  30049920 ctattttcacaagtttgtcgcttgcaaacttgttcttttctatataggtttagcgcttgcta 30049981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 3542245 - 3542310
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||| | ||||||||||||| ||| ||||||| | ||||||||    
T  3542245 aaccctattttcacaagtttgtcgcttacaaacttgttcttttctatctaggtttagcgcttgcta 3542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 29340895 - 29340841
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggttt 295  Q
    ||||||||||||||||||||||| ||||| |||||||| |||| ||| |||||||    
T  29340895 aaccctattttcacaagtttgtcgcttgcaaacttgtttttttctatctaggttt 29340841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 30052207 - 30052257
Alignment:
Q  245 ctattttcacaagtttgtcacttgcgaacttgttcttttttatataggttt 295  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||| |||||||    
T  30052207 ctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggttt 30052257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 22873769 - 22873850
Alignment:
Q  197 aatattattttagagagtttttctcaatttctag-tggattccggaaccctattttcacaagtttgtcacttgcgaacttgt 277  Q
    |||||||||| |||||| |||||||||||| | | |||||||||||||| |  ||||||||||||||| | ||| |||||||    
T  22873769 aatattatttcagagagcttttctcaattttttggtggattccggaacctttatttcacaagtttgtcgcatgcaaacttgt 22873850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 14238426 - 14238506
Alignment:
Q  231 tggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggtttggtgcttgctagcct 310  Q
    |||| ||||||||| |||||||||||||||||| ||||| |||||| |||||||  || || |||| ||| ||||||||||    
T  14238426 tggactccggaaccttattttcacaagtttgtcgcttgcaaacttgtttcttttcaatttatgtttagtgtttgctagcct 14238506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 18727981 - 18727924
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctatttt 251  Q
    |||||||  |||||||||||||||| |||||||||| ||||||| ||||||| ||||||    
T  18727981 aatcaattatattttagagagtttt-ctcaatttctggtggatttcggaaccttatttt 18727924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 12778515 - 12778454
Alignment:
Q  214 tttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaactt 275  Q
    ||||||||||||||| || |||||| ||||| |||||||||||| || || ||||| |||||    
T  12778515 tttttctcaatttctggtagattccagaaccttattttcacaagattatcgcttgcaaactt 12778454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 24443186 - 24443117
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||||| ||||||| || ||||| ||||||||||||| | ||||||||| ||||| | | ||||||||||    
T  24443186 ttttcttaatttctggttgattctggaaccctatttttataagtttgtcgcttgcaagcctgttcttttt 24443117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 22910756 - 22910824
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtc 263  Q
    |||||||||||| |||||| |||||||||||| | |||| |||| ||||| |  ||||| |||||||||    
T  22910756 tcaatattatttcagagagcttttctcaatttttggtggtttccagaacctttatttcataagtttgtc 22910824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 34373920 - 34373865
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctatttt 251  Q
    |||||| |||||||||||||||| |||||||||| |||||||||  |||| ||||||    
T  34373920 tcaataatattttagagagtttt-ctcaatttctggtggattccataaccatatttt 34373865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 48447645 - 48447818
Alignment:
Q  22 attagttcaacaggaaattcaacaagccctaacaactttacgactgagaagataggaattgaacaacgtgacatgtcagaggaaacaactcaggttggct 121  Q
    ||||||||||| ||||| |||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||    
T  48447645 attagttcaactggaaagtcaacaagtcctaacgattttacgactgagaagataggaactgaacaacgtgacatgtctgaaaaaacaactcaggttggct 48447744  T
Q  122 ctgaatgtttagacaaagaatagagtgtgcttggtactgtggtaactgattctgttatcaatgaaaaatcaaat 195  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  48447745 ctgaatgtttagacaaagaacaaagtgtgcttggtactgtagtaaccgattctgttatcgatgaaaaatcaaat 48447818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 31915502 - 31915587
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  31915502 aatcagtagtattttagagagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtt 31915587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 10927151 - 10927235
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||| ||||| ||||||||||||||    
T  10927151 aataatattttagagagtttt-ctcaatttctggtggattccggaaccct--tttcacaagtttgtcgcttgcaaacttgttcttttt 10927235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 10928244 - 10928359
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgt-tcttttttatataggt 293  Q
    |||||| |||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||| | ||||| | ||||||| || |||||    
T  10928244 tcaatagtattttagagagtttt-ctcaatttatagtggattccgaaaccttattttcacaagtttgtcacttacaaacttatatctttttaatctaggt 10928342  T
Q  294 ttggtgcttgctagcct 310  Q
    || |  |||||||||||    
T  10928343 ttagcacttgctagcct 10928359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 12944071 - 12944186
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggt 293  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||||||  |||| |||||| |||||||  || ||| |    
T  12944071 tcaatattattttagagagtttt-ctcaatttctggtggattccagaaccctatttttacaagtttgtcgtttgcaaacttgtttcttttcaatctagat 12944169  T
Q  294 ttggtgcttgctagcct 310  Q
    || | ||||||||||||    
T  12944170 ttagcgcttgctagcct 12944186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 50713668 - 50713749
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgt 277  Q
    |||||| |||||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| | |||||||||||    
T  50713668 tcaataatatttttgagagtttt-ctcaatttctggtggattccgaaaccctattttcacaagtttgtcgcctgcgaacttgt 50713749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 28660881 - 28660798
Alignment:
Q  195 tcaatattattttagagagtttttctcaattt-ctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||| |||||||||||||||| || ||||| || ||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  28660881 tcaataatattttagagagtttt-ctaaattttctggtggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgtt 28660798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 33152857 - 33152771
Alignment:
Q  193 aatcaatattattttagagagttttt-ctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||||| ||||||| ||||||||| || ||||||| |||||||||||||||||||| ||  ||||||||| ||||| ||||||||    
T  33152857 aatcaataatattttatagagttttttcttaatttctggtggattccggaaccctattgtcgtaagtttgtcgcttgcaaacttgtt 33152771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 8967938 - 8967851
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttt 283  Q
    |||||| ||||| |||||||||| | |||||| | |||||||| ||||||||||||||| | |||||||| |||| |||||||||||||    
T  8967938 tcaataatatttcagagagtttt-cacaatttttggtggattctggaaccctattttcataggtttgtcatttgcaaacttgttctttt 8967851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 13444074 - 13444015
Alignment:
Q  244 cctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttg 303  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| |||||||    
T  13444074 cctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagtgcttg 13444015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 8221462 - 8221524
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgt 277  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||||  |||| |||||||    
T  8221462 ttttctcaatttctggtggattccagaaccctattttcataagtttgtcgtttgcaaacttgt 8221524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 23987525 - 23987619
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaacc----ctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||||||| |||||||||||||| | |||||||||| |||||||||||||||     ||||||||||||||||||  |||| || |||||||||||    
T  23987525 aatcaataatattttagagagttat-ctcaatttctggtggattccggaaccttctatattttcacaagtttgtcgtttgcaaagttgttcttttt 23987619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 28659701 - 28659613
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||||| || |||||||||||||| | ||||||||||||||  ||||| || |||||||||||||| || ||||| |||||||| |||||    
T  28659701 tcaataatactttagagagttttttt-aatttctagtggatatcggaatccaattttcacaagtttatcccttgcaaacttgtttttttt 28659613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 9030971 - 9031087
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt-cttttttatataggt 293  Q
    |||||| |||||||||||  |||||||||||| | ||||||||   ||||||||||||| |||||| |  ||||| ||||| || |||||  ||||||||    
T  9030971 tcaataatattttagagaagttttctcaatttatggtggattctacaaccctattttcataagtttattgcttgcaaacttattccttttcaatataggt 9031070  T
Q  294 ttggtgcttgctagcct 310  Q
    || || |||||||||||    
T  9031071 ttagtacttgctagcct 9031087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 10925695 - 10925807
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtt 294  Q
    |||||| ||||||||||||||||| |||||||   ||||||||| ||||| |||||| ||||||||||| ||||| || ||||  ||||  || ||||||    
T  10925695 tcaataatattttagagagttttt-tcaattttcggtggattccagaaccatatttttacaagtttgtcgcttgcaaaattgt--ttttcaatttaggtt 10925791  T
Q  295 tggtgcttgctagcct 310  Q
    | | ||||||||||||    
T  10925792 tagcgcttgctagcct 10925807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 239644 - 239757
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggttt 295  Q
    |||| |||||||||| ||||| || ||||||   ||||||||||||||||||||||| || |||| | ||||| |||||| |||||||| ||||| ||||    
T  239644 aataatattttagagggtttt-cttaatttcagttggattccggaaccctattttcataaatttgacgcttgctaacttgtttctttttaatataagttt 239742  T
Q  296 ggtgcttgctagcct 310  Q
     |  |||||||||||    
T  239743 agcccttgctagcct 239757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 9199349 - 9199285
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagttt 260  Q
    |||||| ||||||||||||||||| ||||||||| |||| ||||||| | ||||| ||||||||||    
T  9199349 tcaataatattttagagagttttt-tcaatttcttgtggcttccggatctctattatcacaagttt 9199285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 40058238 - 40058121
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaacccta-ttttcacaagtttgtcacttgcgaactt-gttcttttttatatagg 292  Q
    |||||| |||||||  |||||||||||||||  | || ||||| | ||||||| |||||| ||||||||| ||||| |||||  ||||||| ||| ||||    
T  40058238 tcaataatattttatggagtttttctcaattgttggttgattctgaaaccctatttttcataagtttgtcgcttgcaaacttatttcttttctatttagg 40058139  T
Q  293 tttggtgcttgctagcct 310  Q
    |||  |||||||||||||    
T  40058138 tttactgcttgctagcct 40058121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 43681414 - 43681530
Alignment:
Q  195 tcaatattatttta-gagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttttt--atatag 291  Q
    |||||| ||||||| ||||  |||||| ||||||| || ||||| ||| | |||||||||||| |||||| ||||| |||||||| ||||||  || |||    
T  43681414 tcaataatattttaagagaagttttcttaatttctggtagattctggatctctattttcacaaatttgtcgcttgcaaacttgtttttttttcaatctag 43681513  T
Q  292 gtttggtgcttgctagc 308  Q
    |||| | ||||||||||    
T  43681514 gtttagcgcttgctagc 43681530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 50857533 - 50857468
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||| | ||||| ||||||| ||| ||||||| | ||||||||    
T  50857533 aaccctattttcacaagtttgtcgcttacaaacttattcttttctatctaggtttagcgcttgcta 50857468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 21903726 - 21903770
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtt 259  Q
    |||||||||||| | |||||||||| |||||||||||||||||||    
T  21903726 ttttctcaattttttgtggattccgaaaccctattttcacaagtt 21903770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 31913359 - 31913414
Alignment:
Q  223 atttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||| ||||||| ||||| |||||||| ||||||||||| ||||| ||||||||    
T  31913359 atttctggtggatttcggaaacctatttttacaagtttgtcgcttgcaaacttgtt 31913414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 8931220 - 8931285
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    |||||||||||||||||||| || ||||| |||||||| ||||  || ||||||| | ||||||||    
T  8931220 aaccctattttcacaagtttatcgcttgcaaacttgtttttttcaatctaggtttagcgcttgcta 8931285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 193 - 283
Target Start/End: Original strand, 12966429 - 12966519
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttt 283  Q
    |||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  12966429 aatcaataatattttagagagtttttctcaatttttggtggatttcggaaccctattttcacaagttcgtcgcttgcgaacttgttctttt 12966519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 4184883 - 4184963
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaactt 275  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  4184883 tcaataatattttagagagtttttctcaatttctcgtggattccgaaaccctattttcacaagtttgtcgcttgcgaactt 4184963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 33051573 - 33051688
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt-tatataggt 293  Q
    |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||  || |||||    
T  33051573 tcaataatattttagagagtttt-ctcaatttctagtggattccagaaccctattttcaaaagtttgtcgcttgcaaacttgttctttttcaatttaggt 33051671  T
Q  294 ttggtgcttgctagcct 310  Q
    || | ||||||||||||    
T  33051672 ttagcgcttgctagcct 33051688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 23457601 - 23457716
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggt 293  Q
    |||||| |||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| ||||| |||||| || ||||  || |||||    
T  23457601 tcaataatattttagagagtttt-ctcaatttttggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttattttcaatctaggt 23457699  T
Q  294 ttggtgcttgctagcct 310  Q
    || | ||||||||||||    
T  23457700 ttagcgcttgctagcct 23457716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 32162104 - 32162021
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||| |||||||||||  |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  32162104 tcaataatattttagagaagttttctcagtttctggtggattcctgaaccctattttcacaagtttgtcacttgcaaacttgtt 32162021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 15129373 - 15129459
Alignment:
Q  224 tttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgctagcct 310  Q
    ||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| | ||||||||||||    
T  15129373 tttctggttgattctggaaccctattttcacaagtttgtcgcttgcgaacttgttcttttctatctaggtttagcgcttgctagcct 15129459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 5171717 - 5171638
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgt 277  Q
    |||| |||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||||| ||||| |||||||    
T  5171717 aataatattttagagagtttt-ctcaatttctagtggattcttgaaccctatttttacaagtttgtcgcttgcaaacttgt 5171638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 1518166 - 1518229
Alignment:
Q  214 tttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgt 277  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||    
T  1518166 tttttctcaatttctagtggatttcggaaccctattttcataagttcgtcgcttgcgaacttgt 1518229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 22011436 - 22011501
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| | ||||||||    
T  22011436 aaccctattttcacaagtttgtcacttgcaaacttgttcttttctatctaggtttagcgcttgcta 22011501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 36647245 - 36647362
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatatagg 292  Q
    |||||||| || |||||||  |||| |||| ||| | |||||||||  ||||||||||||||||||||||| ||||| |||||||||||||  ||  |||    
T  36647245 aatcaataatactttagagttttttcctcattttttggtggattccaaaaccctattttcacaagtttgtcgcttgcaaacttgttcttttcaatcgagg 36647344  T
Q  293 tttggtgcttgctagcct 310  Q
    ||| | ||||||||||||    
T  36647345 tttagcgcttgctagcct 36647362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 295
Target Start/End: Original strand, 36615161 - 36615265
Alignment:
Q  193 aatcaatattattttagagagttttt-ctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttttt-atata 290  Q
    |||||||| ||||||||||||||||| || ||||||| ||||||||||||||| |||||| |||| |||||| ||||| ||||   |||||||| |||||    
T  36615161 aatcaataatattttagagagttttttcttaatttctggtggattccggaaccttatttttacaattttgtcgcttgcaaactaaatcttttttaatata 36615260  T
Q  291 ggttt 295  Q
    |||||    
T  36615261 ggttt 36615265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 36648918 - 36649001
Alignment:
Q  193 aatcaatattattttagagagttttt-ctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaactt 275  Q
    |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||||||||| |||| |||||| ||||| |||||    
T  36648918 aatcaataatattttagagagttttttcttaatttctggtggattccagaaccctatttttacaattttgtcgcttgcaaactt 36649001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 27952407 - 27952342
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  27952407 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 27952342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 25458193 - 25458261
Alignment:
Q  194 atcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgt 262  Q
    ||||||| ||||||| ||| | ||||||||||||||||||||  || ||||||||||||||||||||||    
T  25458193 atcaataatattttaaagaatgtttctcaatttctagtggatatcgcaaccctattttcacaagtttgt 25458261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 28737792 - 28737907
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaag-tttgtcacttgcgaacttgttcttttttatataggt 293  Q
    |||||| |||||||||||||||| ||||||||||  ||||||| | ||| ||||||||||||| |||||| ||||| |||||  ||||||  || |||||    
T  28737792 tcaataatattttagagagtttt-ctcaatttctgttggattctgaaactctattttcacaagttttgtctcttgcaaacttactcttttcaatttaggt 28737890  T
Q  294 ttggtgcttgctagcct 310  Q
    || | ||||||||||||    
T  28737891 ttagcgcttgctagcct 28737907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 21772349 - 21772417
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttt 283  Q
    |||||||||||| |  ||||||| ||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  21772349 ttttctcaatttgtgatggattcaggaaccctattttcataagtttgtcgcttgcaaacttgttttttt 21772417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 12124012 - 12123941
Alignment:
Q  214 tttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttttt 285  Q
    ||||||||||||| | ||||||||| ||||| |||||||||| ||||||| ||||| |||||| | ||||||    
T  12124012 tttttctcaatttttggtggattcctgaaccatattttcacaggtttgtcgcttgcaaacttgatttttttt 12123941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 2155970 - 2156032
Alignment:
Q  244 cctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    |||||||||||||||||||| || || ||||||||||||| ||| ||||||| | ||||||||    
T  2155970 cctattttcacaagtttgtcgctcgcaaacttgttcttttctatctaggtttagcgcttgcta 2156032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 32163906 - 32163840
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttg 261  Q
    |||||| |||||||||||  |||||||||||| |  ||||||||| |||| ||||||||||||||||    
T  32163906 tcaataatattttagagaagttttctcaatttatcatggattccgaaaccatattttcacaagtttg 32163840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 27956243 - 27956178
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||| | ||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  27956243 aaccctattttcataggtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 27956178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 31636337 - 31636402
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    |||| |||||||||||||||||| ||||| |||| |||||||| ||| ||||||| | ||||||||    
T  31636337 aaccatattttcacaagtttgtcgcttgcaaactagttcttttctatctaggtttagcgcttgcta 31636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 33655628 - 33655693
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| |||||||  |||| ||| ||||||| | ||||||||    
T  33655628 aaccctattttcacaagtttgtcgcttgcaaacttgtatttttctatctaggtttagcgcttgcta 33655693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 19582065 - 19582124
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcaca 255  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||  ||||||| ||||||||    
T  19582065 tcaataatattttagagagttttt-tcaatttctagtgaattcgagaacccttttttcaca 19582124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 31634107 - 31634158
Alignment:
Q  244 cctattttcacaagtttgtcacttgcgaacttgttcttttttatataggttt 295  Q
    |||||||||||||||||||| || || ||||||||||||| ||| |||||||    
T  31634107 cctattttcacaagtttgtcgctagcaaacttgttcttttctatctaggttt 31634158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 193 - 310
Target Start/End: Complemental strand, 2472825 - 2472708
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatatagg 292  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||| |||||||   |||  || ||||    
T  2472825 aatcaataatattttagtgagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcggttgcaaacttgtctctttcaatttagg 2472726  T
Q  293 tttggtgcttgctagcct 310  Q
    ||| | ||||||||||||    
T  2472725 tttagcgcttgctagcct 2472708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 43304049 - 43303984
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  43304049 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 43303984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 5128909 - 5128963
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggttt 295  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||    
T  5128909 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggttt 5128963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 43306761 - 43306696
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||  ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  43306761 aaccctattttcacaagtttgttgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 43306696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 8536500 - 8536434
Alignment:
Q  202 tattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgc 269  Q
    |||||||||||||||  |||||||||| ||||||||||||| |||||||||| |||| |||| |||||    
T  8536500 tattttagagagtttc-ctcaatttctggtggattccggaatcctattttcaaaagtctgtcccttgc 8536434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 365698 - 365612
Alignment:
Q  224 tttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgctagcct 310  Q
    ||||| ||||||||  |||||||||||||||||||||||| |||| ||| ||||| |||| | | ||||||| | | ||||||||||    
T  365698 tttctggtggattcaagaaccctattttcacaagtttgtcgcttgggaatttgttattttctttttaggtttagcgtttgctagcct 365612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 45168443 - 45168371
Alignment:
Q  209 gagagtttttctcaatttctagtggattccggaacccta---ttttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||| ||| ||||||||||| |||||||| |||||||||   |||||||||||||||| ||||| ||||||||    
T  45168443 gagattttctctcaatttcttgtggattctggaaccctatatttttcacaagtttgtcgcttgcaaacttgtt 45168371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 1320183 - 1320124
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcaca 255  Q
    |||||| ||||||||||| |||| ||| |||||| |||||||| |||||||||||||||||    
T  1320183 tcaataatattttagagaatttt-ctctatttctggtggattctggaaccctattttcaca 1320124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 2107987 - 2107922
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgt 262  Q
    |||||| |||||||||||| |||||||||| ||| ||||||| ||||||| |||||| ||||||||||    
T  2107987 tcaatagtattttagagag-ttttctcaatctctggtggatt-cggaaccttatttttacaagtttgt 2107922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 3063826 - 3063772
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggttt 295  Q
    ||||||||||||||||||||||| ||||| ||||  ||||||| ||| |||||||    
T  3063826 aaccctattttcacaagtttgtcgcttgcaaactctttcttttctatctaggttt 3063772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 3068964 - 3068899
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||| |||||||| |  ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  3068964 aaccctatttttacaagttttttccttgcaaacttgttcttttctatctaggtttagcgcttgcta 3068899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 22440812 - 22440927
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtt 294  Q
    |||||| ||||||||| || |||||| |||||||||||||||| ||||||||||| ||| ||||||||| ||||||||| ||||||||| ||| ||||||    
T  22440812 tcaataatattttagataggttttcttaatttctagtggattctggaaccctattatcataagtttgtcgcttgcgaacatgttcttttctatctaggtt 22440911  T
Q  295 tggtgcttgctagcct 310  Q
    | |  |||||||||||    
T  22440912 tagcacttgctagcct 22440927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 19497439 - 19497349
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttttt 285  Q
    |||||| ||||||||||| ||||||||||||| |  |||||| |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  19497439 tcaataatattttagagattttttctcaatttttgatggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgttctttttt 19497349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 492523 - 492604
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||| ||||| ||||||||||||| ||||||| || ||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  492523 aataatatttcagagagtttttcttaatttctggttgattccgaaaccctatcttcacaagtttgtcgcttgcaaacttgtt 492604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 18252371 - 18252455
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttct 280  Q
    |||||| ||||||| |||||||| ||||||||||||||||||   |||||||||||||||| ||||||| ||||| ||||||||||    
T  18252371 tcaataatattttaaagagtttt-ctcaatttctagtggattatagaaccctattttcacaggtttgtcgcttgcaaacttgttct 18252455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 21849054 - 21848989
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||| ||||||||    
T  21849054 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttggcgcttgcta 21848989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 26140296 - 26140380
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||||| |||||||||||||||| |||||||| | ||||||||  |||||||||||||| ||||||||| ||||| | ||||||    
T  26140296 aatcaataatattttagagagtttt-ctcaatttttggtggattcttgaaccctattttcataagtttgtcgcttgcaatcttgtt 26140380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 40778875 - 40778821
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggttt 295  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||| ||| |||||||    
T  40778875 aaccctatttttacaagtttgtcgcttgcaaacttgttcttttctatctaggttt 40778821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 306
Target Start/End: Complemental strand, 8456517 - 8456402
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttcta----gtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttat 287  Q
    |||||||| ||||||||||   ||||||||||||| |    ||||||| ||||| |||||||| ||||||| ||| |||||||||||| |||||||  ||    
T  8456517 aatcaataatattttagag---ttttctcaatttcgatctggtggatttcggaatcctatttttacaagttcgtcgcttgcgaacttgtttcttttcaat 8456421  T
Q  288 ataggtttggtgcttgcta 306  Q
     ||||||| | ||||||||    
T  8456420 ctaggtttagcgcttgcta 8456402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 9868501 - 9868473
Alignment:
Q  234 attccggaaccctattttcacaagtttgt 262  Q
    |||||||||||||||||||||||||||||    
T  9868501 attccggaaccctattttcacaagtttgt 9868473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 4888822 - 4888721
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatatagg 292  Q
    |||||||| ||||||||||||| ||| ||||||||| ||| |||||||||| ||||||||||| ||||||| ||||| ||||||||||||| ||| ||||    
T  4888822 aatcaataatattttagagagtgtttttcaatttctggtgaattccggaactctattttcacaggtttgtcgcttgcaaacttgttcttttctatctagg 4888723  T
Q  293 tt 294  Q
    ||    
T  4888722 tt 4888721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 24840100 - 24840180
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  24840100 aataatattttagagagtttt-ctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtt 24840180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 11000960 - 11000845
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggt 293  Q
    |||||| |||||||||||||||| | |||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||| |||||||  || |||||    
T  11000960 tcaataatattttagagagttttcc-caatttctggtggattcctgaaccctattttcactagtttgtcgcttgcgaacttgtttcttttcaatctaggt 11000862  T
Q  294 ttggtgcttgctagcct 310  Q
    || | ||||||||||||    
T  11000861 ttagcgcttgctagcct 11000845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 1365626 - 1365741
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtt 294  Q
    |||||| ||||||||||||||||||||||||| | |||||||  |||||||||||||||||||||  || ||| | ||||||||| |||  || ||||||    
T  1365626 tcaataatattttagagagtttttctcaatttttggtggattatggaaccctattttcacaagttcatcgcttacaaacttgttcctttcaatctaggtt 1365725  T
Q  295 tggtgcttgctagcct 310  Q
    | | ||||||||||||    
T  1365726 tagcgcttgctagcct 1365741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 3778850 - 3778759
Alignment:
Q  193 aatcaatattattttagagagttt-----ttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttc 279  Q
    |||||||| |||||||||||||||     |||||||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  3778850 aatcaataatattttagagagtttaatttttctcaatttctggtggattccggaaccctattttcacaagtttctcgcttgcaaacttgttc 3778759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 30217766 - 30217856
Alignment:
Q  193 aatcaatattattttagagagtttt-tctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttt 282  Q
    |||||||| ||||||||||||| || |||||||| || ||||||| | |||| ||||||||||||||||||| ||||||||||||||||||    
T  30217766 aatcaataatattttagagagtgttatctcaattactggtggatttcagaactctattttcacaagtttgtcgcttgcgaacttgttcttt 30217856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 1369760 - 1369875
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggt 293  Q
    |||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||| |||||||| || ||||| |||||| |||||||  || |||||    
T  1369760 tcaataatattttatagagtttt-ctcaatttctggtggattccggaaccctattttaacaagtttatcgcttgcaaacttgtttcttttcaatctaggt 1369858  T
Q  294 ttggtgcttgctagcct 310  Q
    ||   ||||||||||||    
T  1369859 ttaacgcttgctagcct 1369875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 11228936 - 11229024
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||||| ||||||||||||||||  ||||||||| |||||||| |||||||| |||||||| ||||||| | ||| ||||||||||||||    
T  11228936 tcaataatattttagagagtttta-tcaatttctggtggattctggaacccttttttcacacgtttgtcgcctgcaaacttgttcttttt 11229024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 27142623 - 27142703
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||| ||||| |||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||| ||||| ||||||||    
T  27142623 aataatatttcagagagtttt-ctcaatttctggtggtttcaggaaccctattttcacaagtttgtcgcttgcaaacttgtt 27142703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 5934559 - 5934674
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggt 293  Q
    |||||| ||||||||||| |||| ||||||||||| ||||||| | || |||||||||||||||||||| ||||| || ||| |||||||  || |||||    
T  5934559 tcaataatattttagagaatttt-ctcaatttctaatggattctgaaatcctattttcacaagtttgtcgcttgcaaatttgtttcttttcaatctaggt 5934657  T
Q  294 ttggtgcttgctagcct 310  Q
    || | ||||||||||||    
T  5934658 ttagcgcttgctagcct 5934674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 2767887 - 2767964
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaactt 275  Q
    |||| ||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||| || ||| |||||||||||    
T  2767887 aataatattttagagagtttttctcaatttctggtggattccgaaacccta-tttctcaaattcgtcgcttgcgaactt 2767964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 859245 - 859180
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  859245 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 1217249 - 1217184
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  1217249 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 1217184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 8916511 - 8916423
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||||| |||||||||||||||| |||||||||| ||||||||| |||| |||||| ||||||||| ||  |||| ||||||||| ||||    
T  8916511 tcaataatattttagagagtttt-ctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttcatttt 8916423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 13882775 - 13882710
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  13882775 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 13882710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 11228673 - 11228788
Alignment:
Q  193 aatcaatattattttagagagtttttctcaattt-ctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatata 290  Q
    ||||| || |||||||||||||||| |||||||| || ||||||||  ||||||||||| |||||||||||| ||| | |||||| |||||||||||  |    
T  11228673 aatcactaatattttagagagtttt-ctcaattttctggtggattctagaaccctatttccacaagtttgtcgcttccaaacttgtttcttttttatcaa 11228771  T
Q  291 ggtttggtgcttgctag 307  Q
    ||||| ||| |||||||    
T  11228772 ggtttagtgtttgctag 11228788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 1786640 - 1786726
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||| |||||||||||||||| | ||||||||  ||||||| |||||||||||||| || ||||||| ||||| |||||||| |||||    
T  1786640 aataatattttagagagtttt-cgcaatttctgatggattctggaaccctattttcgcatgtttgtcgcttgcaaacttgttattttt 1786726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 6451884 - 6451802
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||| ||||||||||||||||| ||||||| |  ||||||||| |||| |||||||||| ||||||| ||||| ||||||||    
T  6451884 tcaataatattttagagagttttt-tcaatttttgttggattccgaaaccttattttcacaggtttgtcgcttgcaaacttgtt 6451802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 13466719 - 13466798
Alignment:
Q  229 agtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggtttggtgcttgctag 307  Q
    ||||||||||||||||||||||||| ||||||||   |||| |||||| |||||||| |||||||||| | |||||||||    
T  13466719 agtggattccggaaccctattttcataagtttgttttttgcaaacttgtttctttttaatataggtttagcgcttgctag 13466798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 13886245 - 13886183
Alignment:
Q  244 cctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  13886245 cctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 13886183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 308
Target Start/End: Original strand, 1883450 - 1883557
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggttt 295  Q
    |||| |||||||||||||||||||||||     || ||||| |||||| ||||||||||||||||||  |||| |||||| |||||||  || |||||||    
T  1883450 aataatattttagagagtttttctcaat-----gttgattctggaaccttattttcacaagtttgtcgtttgcaaacttgtttcttttcaatctaggttt 1883544  T
Q  296 ggtgcttgctagc 308  Q
     ||| ||||||||    
T  1883545 agtgtttgctagc 1883557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 1690263 - 1690198
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtc 263  Q
    |||| ||||||||||| |||| ||||||||||  |||||||| ||||||||||||||||| ||||||    
T  1690263 aatactattttagagaatttt-ctcaatttctgatggattccagaaccctattttcacaaatttgtc 1690198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 1874495 - 1874575
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||| |||||||||||||||| |||||||    ||||||||  ||||| ||||||||||||||||||  |||| ||||||||    
T  1874495 tcaataatattttagagagttttcctcaattg---gtggattcttgaaccttattttcacaagtttgtcgtttgcaaacttgtt 1874575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 4133389 - 4133336
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttg 268  Q
    |||||||||||||||| ||||| | |||| ||||||||||||||||||| ||||    
T  4133389 ttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttg 4133336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 27309705 - 27309638
Alignment:
Q  240 gaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggtttggtgcttgcta 306  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||  || ||||||| | ||||||||    
T  27309705 gaaccctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagcgcttgcta 27309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 1220529 - 1220475
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggttt 295  Q
    |||||||||||||||||||||||  |||| ||||||||| ||| ||| |||||||    
T  1220529 aaccctattttcacaagtttgtcgtttgcaaacttgttcatttctatgtaggttt 1220475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 35814826 - 35814899
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgc 269  Q
    |||||| |||||||||||||||| |||||||| | || |||||  ||||| |||||| ||||||||||| |||||    
T  35814826 tcaataatattttagagagtttt-ctcaatttatggtagattcaagaaccttatttttacaagtttgtcgcttgc 35814899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 1753695 - 1753650
Alignment:
Q  233 gattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    ||||| ||||| ||||||||||||||||||| ||||| ||||||||    
T  1753695 gattctggaactctattttcacaagtttgtcgcttgcaaacttgtt 1753650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 4955998 - 4955927
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcactt 267  Q
    |||||| |||||||| ||||||| ||||||||||| |||||||  | || ||||||  |||||||||||||||    
T  4955998 tcaataatattttagggagtttt-ctcaatttctaatggattctaggactctatttatacaagtttgtcactt 4955927  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 7803131 - 7803083
Alignment:
Q  230 gtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    ||||||||||||||| |||||||| ||||||||  ||||| ||||||||    
T  7803131 gtggattccggaaccttattttcataagtttgttgcttgcaaacttgtt 7803083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 303
Target Start/End: Original strand, 10494858 - 10494966
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggt 293  Q
    |||||| |||||||||||||||| |||||||||| ||| |||||||||| ||||||||||| ||||||||||||| |||||| |||||||  || |||||    
T  10494858 tcaataatattttagagagtttt-ctcaatttctggtgaattccggaactctattttcacaggtttgtcacttgcaaacttgtttcttttccatctaggt 10494956  T
Q  294 ttggtgcttg 303  Q
    ||||||||||    
T  10494957 ttggtgcttg 10494966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 40206103 - 40206185
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgt 277  Q
    |||||| ||||||||||| ||||||||||||||| ||| |||||| ||| ||||||||||||||||||| |||||||||||||    
T  40206103 tcaataatattttagagaatttttctcaatttctggtgaattccgaaacactattttcacaagtttgtcgcttgcgaacttgt 40206185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 13990811 - 13990729
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||| ||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  13990811 tcaataatattttagagagttttt-tcaatttctgatggattccagaaccctattttcacaagtttgttacttgcaaacttgtt 13990729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 22486889 - 22486795
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt-tatataggtttggtgcttgctagcct 310  Q
    |||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||| |||||| ||||||| ||||||||||| | ||||||||||||    
T  22486889 ttttctcaatttctggtggattccggaa-cctattttcacaag-ttgtcgcttgcaaacttggtctttttctatataggtttagcgcttgctagcct 22486795  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 24667640 - 24667726
Alignment:
Q  224 tttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgctagcct 310  Q
    |||||||||||||||||||||||||||||||||||||||  | ||||| ||| ||||||| ||| |||||||   ||||||||||||    
T  24667640 tttctagtggattccggaaccctattttcacaagtttgttgcctgcgagcttcttcttttctatctaggtttaacgcttgctagcct 24667726  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 38888117 - 38888042
Alignment:
Q  202 tattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    ||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||| ||||| || |||||    
T  38888117 tattttagagaatttt-ctcaatttctaatggattccgaaaccctattttcacaagtttgtcgcttgcaaatttgtt 38888042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 7634035 - 7634123
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||||| |||||||||||||||| |||||||||| ||||||||| |||| |||||| ||||||||| ||  |||| ||||||||| ||||    
T  7634035 tcaataatattttagagagtttt-ctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttcctttt 7634123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 21433697 - 21433609
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||||| ||||||||||| |||| |||||||| |  || |||| ||||||||||||||| ||||||||| |||||||| |||||||||||    
T  21433697 tcaataatattttagagaatttt-ctcaatttatgatgaattctggaaccctattttcataagtttgtcgcttgcgaatttgttcttttt 21433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 13991513 - 13991398
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggt 293  Q
    |||||| |||||||||||| ||||||||| |||| ||||||||| ||||| ||||||| || ||||||| ||||| |||||| |||||||  || ||| |    
T  13991513 tcaataatattttagagag-ttttctcaaattctggtggattccagaaccttattttcgcatgtttgtcgcttgcaaacttgtttcttttcaatctagat 13991415  T
Q  294 ttggtgcttgctagcct 310  Q
    || | ||||||||||||    
T  13991414 ttagcgcttgctagcct 13991398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 15848361 - 15848441
Alignment:
Q  196 caatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    ||||| |||||||||||||||| |||||||| | ||||||| |||||| || ||||||||| |||||||||||| ||||||||    
T  15848361 caatagtattttagagagtttt-ctcaatttttggtggatttcggaactctcttttcacaattttgtcacttgc-aacttgtt 15848441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 6659419 - 6659354
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| | ||||||||    
T  6659419 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctagatttagcgcttgcta 6659354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 50519272 - 50519224
Alignment:
Q  202 tattttagagagtttttctcaatttctagtggattccggaaccctatttt 251  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  50519272 tattttagagagtttt-ctcaatttctagtggattccagaaccctatttt 50519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 308
Target Start/End: Complemental strand, 7724189 - 7724098
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggtttggtgcttgctagc 308  Q
    |||||||||||||| |||||||||||||||||||||||   |||||||| || || |||||| |||||||  |||||||||| |  |||||||||    
T  7724189 ttttctcaatttctggtggattccggaaccctattttc---agtttgtcgctcgcaaacttgcttcttttcaatataggtttagcacttgctagc 7724098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 9260535 - 9260610
Alignment:
Q  202 tattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    ||||||||| |||||| |||||||||| |||||||| | |||||||||||| ||||||||||  |||| ||||||||    
T  9260535 tattttagatagtttt-ctcaatttctggtggattctgaaaccctattttcgcaagtttgtcgtttgcaaacttgtt 9260610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 18689655 - 18689588
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtc 263  Q
    |||||| ||||||| |||||||| |||||||||| |||||||| | ||||||||||| |||||||||||    
T  18689655 tcaataatattttatagagtttt-ctcaatttctggtggattctgcaaccctatttttacaagtttgtc 18689588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 19935439 - 19935515
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgc 269  Q
    ||||||| |||||||||||| ||||||||||||| |  || |||||  ||||||||||||| ||||||||| |||||    
T  19935439 aatcaatgttattttagagaatttttctcaatttttgatgaattccataaccctattttcataagtttgtcgcttgc 19935515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 54700687 - 54700616
Alignment:
Q  240 gaaccctattttcacaagtttgtcacttgcgaacttg-ttcttttttatataggtttggtgcttgctagcct 310  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||  |||||||||| | | ||||||||||    
T  54700687 gaaccctattctcacaagtttgtcacttgcaaacttgtttcttttcaatataggtttagcgtttgctagcct 54700616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 17254998 - 17254945
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttg 268  Q
    |||||||||||||||| ||||| | |||| ||||||||||||||||||| ||||    
T  17254998 ttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttg 17254945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 7723753 - 7723709
Alignment:
Q  239 ggaaccctattttcacaagtttgtcacttgcgaacttgttctttt 283  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||    
T  7723753 ggaaccctattttcacaagtttgtagcttgcaaacttgttctttt 7723709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 52743761 - 52743729
Alignment:
Q  253 acaagtttgtcacttgcgaacttgttctttttt 285  Q
    |||||||||||||||||||||||||||||||||    
T  52743761 acaagtttgtcacttgcgaacttgttctttttt 52743729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 18657176 - 18657109
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtc 263  Q
    |||||| ||||||| |||||||| |||||||||  |||||||| | || |||||||| |||||||||||    
T  18657176 tcaataatattttatagagtttt-ctcaatttccggtggattctgaaatcctatttttacaagtttgtc 18657109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 53477348 - 53477261
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttt 283  Q
    |||||||  |||||||||||||| |||||||||| ||||||||   ||||| ||||||||| ||||| | ||||  |||||||| ||||    
T  53477348 tcaatatatttttagagagtttt-ctcaatttctggtggattctaaaaccccattttcacaggtttgacgcttgtaaacttgttttttt 53477261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 18468626 - 18468714
Alignment:
Q  218 tctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||| ||  ||||||| | ||||||||    
T  18468626 tctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaagcttgttcttttctacctaggtttagcgcttgcta 18468714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 2687716 - 2687785
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||| ||||| ||||||||||||||    
T  2687716 ttttctcaatttcttgtggattctagaaccctattttcacaagtttgtcgcttgcaaacttgttcttttt 2687785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 26374855 - 26374942
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttt 283  Q
    |||||| || ||||||||||||| || ||||||| ||||||| || ||||||||||| ||||||||||| |||||||||||||||||||    
T  26374855 tcaataataatttagagagtttt-cttaatttctggtggatttcgaaaccctatttttacaagtttgtcgcttgcgaacttgttctttt 26374942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 42891753 - 42891685
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgctagcc 309  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | |||||||||||    
T  42891753 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctagcc 42891685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 20693754 - 20693836
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||| || ||||||||||||| ||||||||||  |||||||||||||| ||||||||||| |||||| ||||| ||||||||    
T  20693754 tcaataatactttagagagtttt-ctcaatttctgatggattccggaaccatattttcacaaatttgtcgcttgcaaacttgtt 20693836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 42890394 - 42890461
Alignment:
Q  243 ccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgctagcct 310  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||||||    
T  42890394 ccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctagcct 42890461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 14130120 - 14130201
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgt 277  Q
    |||||| |||||| ||||||||| |||||||||| ||||||||||||||| ||||||||||| ||| || ||||| |||||||    
T  14130120 tcaataatattttggagagtttt-ctcaatttctggtggattccggaaccttattttcacaaatttatcgcttgcaaacttgt 14130201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 24577662 - 24577581
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgt 277  Q
    |||||| |||||||||||||||| |||||||||| ||||||| || ||||| ||||||||| |||||||| |||| |||||||    
T  24577662 tcaataatattttagagagtttt-ctcaatttctggtggattacgaaaccccattttcacatgtttgtcatttgcaaacttgt 24577581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 310
Target Start/End: Complemental strand, 2189857 - 2189741
Alignment:
Q  193 aatcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatatagg 292  Q
    |||||||| || |||||||  ||||||||| ||| | |||||||||  |||| |||||||||||||||||| ||||| |||||||||||||  ||  |||    
T  2189857 aatcaataatactttagagt-tttttctcattttttggtggattccaaaaccttattttcacaagtttgtcgcttgcaaacttgttcttttcaatcgagg 2189759  T
Q  293 tttggtgcttgctagcct 310  Q
    ||| | ||||||||||||    
T  2189758 tttagcgcttgctagcct 2189741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 24730987 - 24731075
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttt 284  Q
    |||||| |||||||||||||||| |||||||| |  ||||||||| || |||||||||||||||||||  ||||| ||||||||| ||||    
T  24730987 tcaataatattttagagagtttt-ctcaatttttgatggattccgaaatcctattttcacaagtttgttgcttgcaaacttgttcctttt 24731075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 24731189 - 24731297
Alignment:
Q  202 tattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt-cttttttatataggtttggtgc 300  Q
    |||||||||||||||| ||||||||||  || |||||| ||| ||||||||||||||||||  ||||| |||||||| |||||  || ||||||| | ||    
T  24731189 tattttagagagtttt-ctcaatttctgatgaattccgaaactctattttcacaagtttgttgcttgcaaacttgttccttttcaatctaggtttagcgc 24731287  T
Q  301 ttgctagcct 310  Q
    ||||||||||    
T  24731288 ttgctagcct 24731297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 2188479 - 2188375
Alignment:
Q  193 aatcaatattattttagagagttttt-ctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctttttt-atata 290  Q
    |||||||| ||||||||||||||||| || ||||||| ||||||| | |||||||||||| |||| |||||| ||||| ||||   |||||||| |||||    
T  2188479 aatcaataatattttagagagttttttcttaatttctggtggatttcagaaccctatttttacaattttgtcgcttgcaaactaaatcttttttaatata 2188380  T
Q  291 ggttt 295  Q
    |||||    
T  2188379 ggttt 2188375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 2609629 - 2609547
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||| ||||| |||||| |||  ||||||||| ||| |||| | ||||||||||||||||||||||||||||| ||||||||    
T  2609629 tcaataatatttcagagagcttta-tcaatttctggtgaattctgtaaccctattttcacaagtttgtcacttgcaaacttgtt 2609547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 22926737 - 22926683
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggttt 295  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||    
T  22926737 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggttt 22926683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 24578909 - 24578852
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcaca 255  Q
    |||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  24578909 aataatattttagagagtttt-cacaatttctagtggattccagaaccctattttcaca 24578852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 22512135 - 22512070
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||  ||||||| | ||||||||    
T  22512135 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgcta 22512070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 22519435 - 22519370
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||  ||||||| | ||||||||    
T  22519435 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgcta 22519370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 22921939 - 22921874
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||| ||| ||||||| | ||||||||    
T  22921939 aaccctattttcacaagtttgtcgcttgcaaacttattcttttctatctaggtttagcgcttgcta 22921874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 23570584 - 23570649
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    |||| |||||||||||||||||| ||||| ||||||||||||| ||| ||||||| | ||||||||    
T  23570584 aaccttattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgcta 23570649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 16598203 - 16598286
Alignment:
Q  195 tcaatattattttagagagtttttctcaattt-ctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||| |||||||||||||||| |||||||| || ||| |||  ||||||||||||||||||||||||| | ||| ||||||||    
T  16598203 tcaataatattttagagagtttt-ctcaatttactggtgtattttggaaccctattttcacaagtttgtcgcgtgcaaacttgtt 16598286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 2689121 - 2689183
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||||||||||||| |||||| |||||||||||||||||||  |||||| ||||| ||||||||    
T  2689121 ttttctcaatttct-gtggatgccggaaccctattttcacagttttgtcgcttgcaaacttgtt 2689183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 16598121 - 16598183
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagt 258  Q
    |||||| |||||||||||||||| |||| ||||| ||| ||| |||||||||||||||||||||    
T  16598121 tcaataatattttagagagtttt-ctcagtttctggtgtatttcggaaccctattttcacaagt 16598183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 6845336 - 6845401
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    |||||||||||||||||||| || ||||  ||||||||||||| ||| ||||||| | ||||||||    
T  6845336 aaccctattttcacaagtttatcgcttgtaaacttgttcttttctatctaggtttagcgcttgcta 6845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 37189866 - 37189931
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||| ||| ||| ||| | ||||||||    
T  37189866 aaccctattttcacaagtttgtcgcttgcaaacttattcttttctatctagttttagagcttgcta 37189931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 25479520 - 25479448
Alignment:
Q  215 ttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg-ttctttttta 286  Q
    ||||||||| |||| ||||||||||||||| |||||||| |  |||||||||||| | |||| ||||||||||    
T  25479520 ttttctcaaattctggtggattccggaaccttattttcaaagatttgtcacttgcaaccttgtttctttttta 25479448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 26377986 - 26378033
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaac 243  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |||||    
T  26377986 tcaataatattttagagagtttt-ctcaatttctagtggattctggaac 26378033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 22520888 - 22520823
Alignment:
Q  241 aaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgcta 306  Q
    |||||||||||||||| |||||| ||||| |||||| |||||| ||  ||||||| | ||||||||    
T  22520888 aaccctattttcacaaatttgtcgcttgcaaacttgatcttttctacctaggtttagcgcttgcta 22520823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 1614 - 1695
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||| ||||||||| |||||||||||| |||| ||||||||| ||||| |||||| |||||||||||  |||| ||||||||    
T  1614 aataatattttagatagtttttctcaaattctggtggattccagaaccatattttgacaagtttgtcgtttgcaaacttgtt 1695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 16002 - 16101
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtt 294  Q
    |||||| ||||||| |||||||| || ||||||| ||||||||   ||  ||||||||| | ||||||||||||| ||||||||||||| ||| ||||||    
T  16002 tcaataatattttatagagtttt-ctaaatttctggtggattctataatactattttcagatgtttgtcacttgcaaacttgttcttttctatctaggtt 16100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 14430 - 14374
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttca 253  Q
    |||| ||||||||| ||||||||||||||| | ||||||||||||  ||||||||||    
T  14430 aataatattttagaaagtttttctcaatttttggtggattccggattcctattttca 14374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 14810 - 14881
Alignment:
Q  205 tttagagagtttttct-caatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaactt 275  Q
    |||||||||||||| | |||||| | ||||||||||||  ||||||||||||||||| || ||||| |||||    
T  14810 tttagagagttttttttcaatttttggtggattccggattcctattttcacaagtttttcgcttgccaactt 14881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 9657 - 9771
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaa--gtttgtcacttgcgaacttgttcttttttatatagg 292  Q
    |||||| ||||| |||||||||| |||||||||| ||||||| |||||||||||||||||||  ||| ||| ||||  |||||||||||||  || ||||    
T  9657 tcaataatatttcagagagtttt-ctcaatttctggtggatttcggaaccctattttcacaagtgttagtcgcttggaaacttgttcttttcaatctagg 9755  T
Q  293 tttggtgcttgctagc 308  Q
    |||   ||||||||||    
T  9756 tttaccgcttgctagc 9771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 17596 - 17677
Alignment:
Q  197 aatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgtt 278  Q
    |||| ||||||||| |||||||||||| |||  ||||||||| ||||| |||||| |||||||||||  |||| ||||||||    
T  17596 aataatattttagatagtttttctcaaattcaggtggattccagaaccatattttgacaagtttgtcgtttgcaaacttgtt 17677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 145688 - 145769
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg 276  Q
    |||||| ||||||||| | ||||||||||||| | ||||||||  |||||||||||| ||||| ||||| ||||| ||||||    
T  145688 tcaataatattttagataatttttctcaatttttggtggattctagaaccctatttttacaagcttgtcgcttgcaaacttg 145769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 144051 - 143974
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttg 276  Q
    |||||| |||||||||||||||| |||||||    ||||||||||||| ||||||||||||| ||| || ||||| ||||||    
T  144051 tcaataatattttagagagtttt-ctcaattg---gtggattccggaaacctattttcacaaatttttcgcttgcaaacttg 143974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 11672 - 11608
Alignment:
Q  246 tattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgctagcct 310  Q
    |||||||||||||||||||||||| ||||| |||||||| || |||| ||  |||||||||||||    
T  11672 tattttcacaagtttgtcacttgcaaactttttctttttaatctaggattaatgcttgctagcct 11608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 49284 - 49362
Alignment:
Q  202 tattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttctt 281  Q
    |||||||||||||||| || | ||| | |||||||  ||||||||||||||| ||||||||| ||||| |||||||||||    
T  49284 tattttagagagttttcctta-tttatggtggattttggaaccctattttcataagtttgtcgcttgcaaacttgttctt 49362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 37674 - 37778
Alignment:
Q  202 tattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgct 301  Q
    |||||||||||||||| || ||||||| || ||||  |||||| |||||||| ||||||||| ||||| |||||||||||||  || ||||||| | |||    
T  37674 tattttagagagttttcct-aatttctggtcgattttggaacc-tattttcataagtttgtcgcttgcaaacttgttcttttcaatctaggtttagcgct 37771  T
Q  302 tgctagc 308  Q
    | |||||    
T  37772 ttctagc 37778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 10609 - 10677
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtc 263  Q
    |||||||||||| |||||| |||||||||||| | |||| |||| ||||| |  ||||| |||||||||    
T  10609 tcaatattatttcagagagcttttctcaattttttgtggtttccagaacctttatttcataagtttgtc 10677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 15198 - 15117
Alignment:
Q  195 tcaatattattttagagagtttttctcaatttctagtggattccggaaccctattttcacaagtttgtcacttgcgaacttgt 277  Q
    |||||| |||||||||| | |||||||||||||| ||||||||  |||||||||||| ||||||| ||| |||  ||||||||    
T  15198 tcaataatattttagag-gattttctcaatttctggtggattctagaaccctatttttacaagttcgtcgcttaggaacttgt 15117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 46855 - 46758
Alignment:
Q  209 gagagtttttctcaatttctagtggattccggaacccta-ttttcacaagtttgtcacttgcgaacttgttcttttttatataggtttggtgcttgct 305  Q
    |||| ||| ||||||||| | ||||||||||||||| || |||| | | ||||||| ||||| ||||||||||||| ||| ||||||| | |||||||    
T  46855 gagattttctctcaatttttggtggattccggaaccttaattttgataggtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgct 46758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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