View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10505_high_13 (Length: 246)
Name: NF10505_high_13
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30287944 - 30287707
Alignment:
| Q |
1 |
agaagcagagagttaagtaggttattagttatatggattagctcctcgaatgagtttagagagaatgccaaattttaatttatgttggcatggcgcggga |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30287944 |
agaaacagagagttaagtaggtcattagttatatggattagctcctcgaatgagtttagagagaatgccaaattttaatttatgttggcatggcacggga |
30287845 |
T |
|
| Q |
101 |
aagtacactatttgtattttgtaattttatcatactatgtttctatgtggccattattgatttttatcaaagttataggtaatattgagtctcatcaatg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
30287844 |
aagtacactagttgtattttgtaattttatcatactatgtttctatttggccattattgatttttatcaaagttatcggtaatgttgagtatcatcaatg |
30287745 |
T |
|
| Q |
201 |
ctaagtttgtaaggaactttagattccattactagtta |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287744 |
ctaagtttgtaaggaactttagattccattactagtta |
30287707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 41706046 - 41706195
Alignment:
| Q |
1 |
agaagcagagagttaagtaggttattagttata-tggattagctcctcgaatgagtttagagagaatgccaaattttaatttatgttggcatggcgcggg |
99 |
Q |
| |
|
|||| |||| |||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41706046 |
agaaacagacagttaagtaggtcgttaggtataatggattagctcctcgaatgagtttagagagaatgccaaattttaatttatgttggcat-----ggg |
41706140 |
T |
|
| Q |
100 |
aaagtacactatttgtattttgtaattttatcatactatgtttctatgtggccat |
154 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
41706141 |
aaagtacgctagttgtattttgtaattttatcatactatgtttttatttggccat |
41706195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 41706335 - 41706376
Alignment:
| Q |
193 |
catcaatgctaagtttgtaaggaactttagattccattacta |
234 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41706335 |
catcaatgctaagtctgtaaggaactttagattccattacta |
41706376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University