View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_high_14 (Length: 241)
Name: NF10505_high_14
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_high_14 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 43817478 - 43817705
Alignment:
| Q |
14 |
caacaataatctttaaattctcattatcaaatcatactcttttttggaagtttgtcgtgacttgcctgagagtatgaagaaatcaactatttatttttat |
113 |
Q |
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| T |
43817478 |
caacaataatctttaaattctcattatcaaatcatactcttttttggaagtttgtcgtgacttgcctgagaatatgaagaaatcaactatttatttttat |
43817577 |
T |
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| Q |
114 |
gcagcaagtgtatttggtaaaaacttgttgcatcaatatcatcgatgtatcttcccttactccttaattttatttgttgttgttgcaaatccatgagttt |
213 |
Q |
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| T |
43817578 |
gcagcaagtgtatttggtaaaaacttgttgcatcaatatcatcgatgtatcttcccttactccttaattttatttgttgttgttgcaaatccatgagttt |
43817677 |
T |
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| Q |
214 |
cttatatccagttttcattcaaatatac |
241 |
Q |
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| T |
43817678 |
cttatatccagttttcattcaaatatac |
43817705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 43819606 - 43819697
Alignment:
| Q |
14 |
caacaataatctttaaattctcattatcaaatcatactcttttttggaagtttgtcgtgacttgcctgagagtatgaagaaatcaactatttat |
107 |
Q |
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| T |
43819606 |
caacaataatctttaa-ttctcattatcaa-tcatactcttttttggaagtttgttatgacttgcttgagagtaggaaaaaaccaactatttat |
43819697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 43817406 - 43817441
Alignment:
| Q |
128 |
tggtaaaaacttgttgcatcaatatcatcgatgtat |
163 |
Q |
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| T |
43817406 |
tggtaaaaacttgttgcatcaatatcatcgatgtat |
43817441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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