View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10505_high_15 (Length: 240)
Name: NF10505_high_15
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_high_15 |
 | |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0096 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0049 (1 HSPs) |
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| [»] scaffold0500 (1 HSPs) |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 13945778 - 13945619
Alignment:
| Q |
18 |
attctttgtttggagaatcttcaagagaattttcatcctttttgtttgagtgaatttgactctcttcttcatcttcttcaatgatcnnnnnnngattttc |
117 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
13945778 |
attctttgtttggagaatcttgaagagaattttcatcctttttgtttgagtgaatttgactctcttcttcatcttcttcaatgatctttttttgattttc |
13945679 |
T |
|
| Q |
118 |
aaattcttcac-attcattaaattttatacgtatactttcttctacaactcttgttctta |
176 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
13945678 |
aaattcttcactattcattaaattttatacgtatactttcttctacaattcttgttctta |
13945619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 14086967 - 14086808
Alignment:
| Q |
18 |
attctttgtttggagaatcttcaagagaattttcatcctttttgtttgagtgaatttgactctcttcttcatcttcttcaatgatcnnnnnnngattttc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14086967 |
attctttgtttggagaatcttgaagagaattttcatcctttttgtttgagtgaatttgactctcttcttcatcttcttcaatgatctttttttgattttc |
14086868 |
T |
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| Q |
118 |
aaattcttcac-attcattaaattttatacgtatactttcttctacaactcttgttctta |
176 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14086867 |
aaattcttcactattcattaaattttatacgtatactttcttctacaattcttgttctta |
14086808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 24992931 - 24992810
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
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|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| | |
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| T |
24992931 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac |
24992832 |
T |
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| Q |
216 |
ctagaaatatagctttgtctga |
237 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
24992831 |
caagaaatatagctttgtctga |
24992810 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 240
Target Start/End: Complemental strand, 17946345 - 17946185
Alignment:
| Q |
80 |
tcttcttcatcttcttcaatgatcnnnnnnngattttcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaat |
179 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||| ||| ||| |||||| |||||| ||| ||||||||||||||| | |||||||||||| || |
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| T |
17946345 |
tcttcatcttcttcttcaatgatcttgttttgattttcaagttcctcaaattcatcaaatttgatatgtatactttcttctagagctcttgttcttagat |
17946246 |
T |
|
| Q |
180 |
tgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctttgtctgattt |
240 |
Q |
| |
|
| || | || |||||||||||||| | || ||||| | ||||| |||||||||||||| |
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|
| T |
17946245 |
tataaattctataggcttttgatgtagatgaatatcccaaaaataatgctttgtctgattt |
17946185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 8998724 - 8998600
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| | |
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| T |
8998724 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac |
8998625 |
T |
|
| Q |
216 |
ctagaaatatagctttgtctgattt |
240 |
Q |
| |
|
| ||||||||||||||||||||||| |
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|
| T |
8998624 |
caagaaatatagctttgtctgattt |
8998600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 27747145 - 27747236
Alignment:
| Q |
149 |
atactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctttgtctgattt |
240 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| | ||||| ||||||||||| | ||| ||||| | |||||| ||||||||||||| |
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| T |
27747145 |
atactttcttcaagaactcttgttcttaaattgtaaattctgtatgcttttgatgtggaagaatatcccaaaaatattcctttgtctgattt |
27747236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 9007894 - 9007773
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| | |
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| T |
9007894 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac |
9007795 |
T |
|
| Q |
216 |
ctagaaatatagctttgtctga |
237 |
Q |
| |
|
| |||||||||||||||||||| |
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| T |
9007794 |
caagaaatatagctttgtctga |
9007773 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 52893 - 52769
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| | |
|
|
| T |
52893 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctatatgcttttgaagtagcagagtaac |
52794 |
T |
|
| Q |
216 |
ctagaaatatagctttgtctgattt |
240 |
Q |
| |
|
| ||||||||||||||||||||||| |
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|
| T |
52793 |
caagaaatatagctttgtctgattt |
52769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 610610 - 610486
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| | |
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|
| T |
610610 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac |
610511 |
T |
|
| Q |
216 |
ctagaaatatagctttgtctgattt |
240 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
610510 |
caagaaatatagctttgtctgattt |
610486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 724606 - 724730
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| | |
|
|
| T |
724606 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac |
724705 |
T |
|
| Q |
216 |
ctagaaatatagctttgtctgattt |
240 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
724706 |
cgagaaatatagctttgtctgattt |
724730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 116026 - 115902
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| | |
|
|
| T |
116026 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac |
115927 |
T |
|
| Q |
216 |
ctagaaatatagctttgtctgattt |
240 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
115926 |
caagaaatatagctttgtctgattt |
115902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 85658 - 85537
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || | |||||| | |
|
|
| T |
85658 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtagcagagtaac |
85559 |
T |
|
| Q |
216 |
ctagaaatatagctttgtctga |
237 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
85558 |
caagaaatatagctttgtctga |
85537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 18830 - 18742
Alignment:
| Q |
152 |
ctttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctttgtctgattt |
240 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| | ||||| ||||||||||| | ||| ||||| | |||||| ||||||||||||| |
|
|
| T |
18830 |
ctttcttcaagaactcttgttcttaaattgtaaattctgtaagcttttgatgtggaagaatatcccaaaaatattcctttgtctgattt |
18742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 19688675 - 19688554
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || |||||| | |
|
|
| T |
19688675 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctagaacttttgttctcaagttatacaccctataagcttttgaagtaacagagtaac |
19688576 |
T |
|
| Q |
216 |
ctagaaatatagctttgtctga |
237 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
19688575 |
caagaaatatagctttgtctga |
19688554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 45495351 - 45495457
Alignment:
| Q |
131 |
tcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctt |
230 |
Q |
| |
|
|||| |||||| ||| | ||||||||||||| | ||||||||||| |||||| | || || ||||||||||| | ||| ||||| | |||||| |||| |
|
|
| T |
45495351 |
tcatcaaatttgatatgcatactttcttctagagttcttgttcttagattgtagattctatatgcttttgatgtagaagaatatcccaaaaatattgctt |
45495450 |
T |
|
| Q |
231 |
tgtctga |
237 |
Q |
| |
|
||||||| |
|
|
| T |
45495451 |
tgtctga |
45495457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0500 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0500
Description:
Target: scaffold0500; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 9821 - 9700
Alignment:
| Q |
116 |
tcaaattcttcacattcattaaattttatacgtatactttcttctacaactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatc |
215 |
Q |
| |
|
|||| ||| ||| |||||| ||||||||| | ||||||||||||| |||| ||||||| || || || | ||| || |||||||| || ||||| | |
|
|
| T |
9821 |
tcaagttcctcaaattcatcaaattttatgtgcatactttcttctataacttttgttctcaagttatacaccctataagcttttgaagtatctgagtaac |
9722 |
T |
|
| Q |
216 |
ctagaaatatagctttgtctga |
237 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
9721 |
caagaaatatagctttgtctga |
9700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 167108 - 167031
Alignment:
| Q |
163 |
aactcttgttcttaaattgtataacctgtaggcttttgatgttgtagagtatcctagaaatatagctttgtctgattt |
240 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||||||||| | ||| ||||| | |||||| |||| |||||||| |
|
|
| T |
167108 |
aactcttgttcttaaattgtagattctgtaagcttttgatgtggaagaatatcccaaaaatattcctttatctgattt |
167031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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