View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10505_high_16 (Length: 239)

Name: NF10505_high_16
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10505_high_16
NF10505_high_16
[»] scaffold0287 (1 HSPs)
scaffold0287 (4-223)||(16053-16272)
[»] chr7 (2 HSPs)
chr7 (4-223)||(3629813-3630032)
chr7 (131-223)||(3619564-3619656)
[»] chr4 (4 HSPs)
chr4 (147-223)||(8900353-8900429)
chr4 (147-223)||(8914258-8914334)
chr4 (147-223)||(8999941-9000017)
chr4 (147-223)||(9014050-9014126)
[»] chr5 (1 HSPs)
chr5 (147-223)||(20073812-20073888)


Alignment Details
Target: scaffold0287 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 16272 - 16053
Alignment:
Q  4 aaaaaacttacatcacaagcaagcagacatagtgaatttgtgatacatgacatatacccttatgcatnnnnnnnncaagcattcctccacagtctaatta 103  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  16272 aaaaaacttgcaccacaagcaagcagacatagtgaatttgtgatacatgacatatacccttatgcataaaaaaaacaagcattcctccacagtctaatta 16173  T
Q  104 ccagcaagcattctttcttttccttgtgacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaaccctt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16172 ccagcaagcattctttcttttccttgtgacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaaccctt 16073  T
Q  204 cagtgtcaatatcttccttt 223  Q
    ||||||||||||||||||||    
T  16072 cagtgtcaatatcttccttt 16053  T

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Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 3629813 - 3630032
Alignment:
Q  4 aaaaaacttacatcacaagcaagcagacatagtgaatttgtgatacatgacatatacccttatgcatnnnnnnnncaagcattcctccacagtctaatta 103  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  3629813 aaaaaacttgcaccacaagcaagcagacatagtgaatttgtgatacatgacatatacccttatgcataaaaaaaacaagcattcctccacagtctaatta 3629912  T
Q  104 ccagcaagcattctttcttttccttgtgacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaaccctt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3629913 ccagcaagcattctttcttttccttgtgacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaaccctt 3630012  T
Q  204 cagtgtcaatatcttccttt 223  Q
    ||||||||||||||||||||    
T  3630013 cagtgtcaatatcttccttt 3630032  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 3619564 - 3619656
Alignment:
Q  131 gacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||    
T  3619564 gacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagcaagtcctggcaatccttcagtgtctatatcttccttt 3619656  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 8900353 - 8900429
Alignment:
Q  147 tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt 223  Q
    |||||||  |||||||||| | |||||||||||||  ||  ||||||||| ||| |||||| |||||||||||||||    
T  8900353 tcttggctgcaaggcaaagctcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttccttt 8900429  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 8914258 - 8914334
Alignment:
Q  147 tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt 223  Q
    |||||||  |||||||||| | |||||||||||||  ||  ||||||||| ||| |||||| |||||||||||||||    
T  8914258 tcttggctgcaaggcaaagttcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttccttt 8914334  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 8999941 - 9000017
Alignment:
Q  147 tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt 223  Q
    |||||||||||||||||||  ||||||||||||||  ||  |  |||||||||  |||||| |||||||||||||||    
T  8999941 tcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttccttt 9000017  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 9014126 - 9014050
Alignment:
Q  147 tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt 223  Q
    |||||||||||||||||||  ||||||||||||||  ||  |  |||||||||  |||||| |||||||||| ||||    
T  9014126 tcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatctttcttt 9014050  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 20073812 - 20073888
Alignment:
Q  147 tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt 223  Q
    |||||||  |||||||||| | |||||| |||||   ||  ||||||||||||| |||||| |||||||||||||||    
T  20073812 tcttggctgcaaggcaaagctcattctttttgtgctgagtgagtcctggcaacctttcagtatcaatatcttccttt 20073888  T

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