View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_high_19 (Length: 229)
Name: NF10505_high_19
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_high_19 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 50985646 - 50985869
Alignment:
| Q |
6 |
attaaccagtcccacttattatgttagcatgtggtattcggaaatggagccatcactctctcgcaccatatattattctctcccaaatctgacatatttt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50985646 |
attaaccagtcccacttattatgttagcatgtggtattcggaaatggagccatcactctctcgcaccatatattattctctccaaaatctgacatatttt |
50985745 |
T |
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| Q |
106 |
ctgcagnnnnnnnctccttccaactcatattttcagcaattccagaaacttaaccccactccacgtgaatctgacacgctcaatttcaggaaataaacct |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50985746 |
ctgcagaaacaaactccttccaactcatattttcagcaattccagaaacttaaccccactccacgtgaatctgacacgctcaatttcaggaaataaacct |
50985845 |
T |
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| Q |
206 |
aaattaattacattacattaccta |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
50985846 |
aaattaattacattacattaccta |
50985869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 51088780 - 51089003
Alignment:
| Q |
6 |
attaaccagtcccacttattatgttagcatgtggtattcggaaatggagccatcactctctcgcaccatatattattctctcccaaatctgacatatttt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51088780 |
attaaccagtcccacttattatgttagcatgtggtattcggaaatggagccatcactctctcgcaccatatattattctctccaaaatctgacatatttt |
51088879 |
T |
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| Q |
106 |
ctgcagnnnnnnnctccttccaactcatattttcagcaattccagaaacttaaccccactccacgtgaatctgacacgctcaatttcaggaaataaacct |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51088880 |
ctgcagaaacaaactccttccaactcatattttcagcaattccagaaacttaaccccactccacgtgaatctgacacgctcaatttcaggaaataaacct |
51088979 |
T |
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| Q |
206 |
aaattaattacattacattaccta |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
51088980 |
aaattaattacattacattaccta |
51089003 |
T |
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