View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10505_high_21 (Length: 227)
Name: NF10505_high_21
Description: NF10505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10505_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 13945313 - 13945111
Alignment:
| Q |
17 |
gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945313 |
gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg |
13945214 |
T |
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| Q |
117 |
ttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaatcttcgtgtggtcccctttgc |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |
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| T |
13945213 |
ttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaatcttcctgtgatcccctttgc |
13945114 |
T |
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| Q |
217 |
ttc |
219 |
Q |
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||| |
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| T |
13945113 |
ttc |
13945111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 14086502 - 14086300
Alignment:
| Q |
17 |
gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086502 |
gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg |
14086403 |
T |
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| Q |
117 |
ttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaatcttcgtgtggtcccctttgc |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |
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| T |
14086402 |
ttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaatcttcctgtgatcccctttgc |
14086303 |
T |
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| Q |
217 |
ttc |
219 |
Q |
| |
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||| |
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| T |
14086302 |
ttc |
14086300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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